PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_011524-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | YABBY | ||||||||
Protein Properties | Length: 153aa MW: 16916.1 Da PI: 8.1417 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 192.5 | 1.9e-59 | 2 | 147 | 2 | 162 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 +++ +se+vCyv+CnfCntilavsvPstsl++vvtvrCGhC++llsvn+ q l+ ++ ++ ++++ + ++ + s+s+ ++ NNU_011524-RA 2 SLDVASEHVCYVHCNFCNTILAVSVPSTSLYNVVTVRCGHCANLLSVNMGALLQPLPLQDI---------QN----HNSSSEDSTKGSGSSSKCNK 84 67789*********************************************99999998883.........33....33333333344444455555 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162 +++l+ +++ pr+ p +rPPekrqrvPsaynrfikeeiqrikasnP+ishreafs+aakn +h NNU_011524-RA 85 VSMLD-TAENDQPRMLP-MRPPEKRQRVPSAYNRFIKEEIQRIKASNPEISHREAFSTAAKNRSH 147 54554.45667899999.9*******************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.6E-64 | 6 | 147 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.83E-6 | 97 | 142 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 1.81E-4 | 109 | 136 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MSLDVASEHV CYVHCNFCNT ILAVSVPSTS LYNVVTVRCG HCANLLSVNM GALLQPLPLQ 60 DIQNHNSSSE DSTKGSGSSS KCNKVSMLDT AENDQPRMLP MRPPEKRQRV PSAYNRFIKE 120 EIQRIKASNP EISHREAFST AAKNRSHGQG EWS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019053973.1 | 1e-104 | PREDICTED: putative axial regulator YABBY 2 isoform X4 | ||||
Swissprot | Q10FZ7 | 1e-61 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A1U8Q584 | 1e-102 | A0A1U8Q584_NELNU; putative axial regulator YABBY 2 isoform X4 | ||||
STRING | XP_010247851.1 | 8e-92 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 7e-58 | YABBY family protein |