PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011384-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 392aa    MW: 44656.1 Da    PI: 7.059
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011384-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.27.9e-50111391128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                    +ppGfrFhPt+eel+++yL kkv+++k+++ +vi+evd++k+ePwd++   k+ ++ + +wyfFs+++kky+tg r+nrat++g+Wk tg+dk ++
  NNU_011384-RA  11 VPPGFRFHPTEEELLHYYLWKKVTHEKIDF-NVIREVDLNKLEPWDIQGrcKIGSSPQdDWYFFSHNHKKYPTGMRTNRATRTGFWKVTGRDKVIY 105
                    69****************************.99**************9523444433359************************************ PP

            NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +g++ktLvfykgrap+g+k++W+mheyrl
  NNU_011384-RA 106 G-NSTRIGMRKTLVFYKGRAPNGQKSHWIMHEYRL 139
                    9.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-557169IPR003441NAC domain
PROSITE profilePS5100553.71511169IPR003441NAC domain
PfamPF023651.4E-2612139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MSVSVNGQSQ VPPGFRFHPT EEELLHYYLW KKVTHEKIDF NVIREVDLNK LEPWDIQGRC  60
KIGSSPQDDW YFFSHNHKKY PTGMRTNRAT RTGFWKVTGR DKVIYGNSTR IGMRKTLVFY  120
KGRAPNGQKS HWIMHEYRLH DHSIDTNASS PAGETIQEEG WVVCRVFKQK SPRRNLGSRN  180
NPSVNVHAST CTSNSNMKGR SMEQMMTKIN QQESQTDENV NDNATTNSDM RLLRPIEMAI  240
NNGFPEELSL TQQLQAPESP VLPSLEEEKT EFDLIQLGGS PQASYQPIRL KTLHLLNDTD  300
PSVTNQDSNN VNMVCRITEP GLSKWAAMDQ LIAFHLNGPA ETCKQLACFS MAFCSAPDYN  360
LQLPQLHDLN GSTQHTHTSK DPNSDIDLWS FT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-43817114167NO APICAL MERISTEM PROTEIN
1ut4_B1e-43817114167NO APICAL MERISTEM PROTEIN
1ut7_A1e-43817114167NO APICAL MERISTEM PROTEIN
1ut7_B1e-43817114167NO APICAL MERISTEM PROTEIN
3swm_A9e-44817117170NAC domain-containing protein 19
3swm_B9e-44817117170NAC domain-containing protein 19
3swm_C9e-44817117170NAC domain-containing protein 19
3swm_D9e-44817117170NAC domain-containing protein 19
3swp_A9e-44817117170NAC domain-containing protein 19
3swp_B9e-44817117170NAC domain-containing protein 19
3swp_C9e-44817117170NAC domain-containing protein 19
3swp_D9e-44817117170NAC domain-containing protein 19
4dul_A1e-43817114167NAC domain-containing protein 19
4dul_B1e-43817114167NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263433.10.0PREDICTED: NAC domain-containing protein 43-like
TrEMBLA0A1U8ALA50.0A0A1U8ALA5_NELNU; NAC domain-containing protein 43-like
STRINGXP_010263433.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.11e-91NAC family protein