PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010791-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 316aa    MW: 35251.3 Da    PI: 9.2695
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010791-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.42.2e-19188221134
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                    Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  NNU_010791-RA 188 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 221
                    *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.7E-19182233IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-13184222No hitNo description
Gene3DG3DSA:3.30.50.101.7E-15186221IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.466186218IPR000679Zinc finger, GATA-type
CDDcd002029.94E-12187215No hitNo description
PfamPF003204.3E-17188221IPR000679Zinc finger, GATA-type
PROSITE patternPS003440188213IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MNPIYLNLNL NPSLSSFPLV EPNDEDQQYC QLFSPPPSQT NSSLHSTPLS FNSAREGGSH  60
DHEAHDREQQ EQQQRQEADK GSEGYHLDFP YPPLQSSKNG INSSLELSIK QEIRDESQSN  120
STGSARWMSS KMRLMRKMMN SDRMGADKPA SGNTQKFQDH HQQPSSLEMD SSSSNSSSNN  180
SNITVRVCSD CNTTKTPLWR SGPRGPKSLC NACGIRQRKA RRAMAAAAAS GTLLPADTPS  240
LQRKVHHKEK RSETGYVPQY KKRCKLAPSP RSRKKLCFED FTINLSKNSA FHRVFPQDEK  300
EAAILLMALS CGLVHG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262144.10.0PREDICTED: putative GATA transcription factor 22
TrEMBLA0A1U8AAB10.0A0A1U8AAB1_NELNU; putative GATA transcription factor 22
STRINGXP_010262144.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.13e-29cytokinin-responsive gata factor 1