PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_010653-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB | ||||||||
Protein Properties | Length: 288aa MW: 32436.7 Da PI: 6.6572 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed++l+d+++ +G g Wk +++ g++R++k+c++rw++yl NNU_010653-RA 14 RGAWTVYEDQILIDYITTHGDGKWKELPKKAGLNRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 3.9e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ ++eE+el+ +++++lG++ W++Ia +++ gRt++++k++w++ NNU_010653-RA 67 RGNISAEEEELIMRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 7899******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.72 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.64E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.68E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.158 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 6.0E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.18E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006633 | Biological Process | fatty acid biosynthetic process | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MGRSPCCVKE GLNRGAWTVY EDQILIDYIT THGDGKWKEL PKKAGLNRCG KSCRLRWLNY 60 LRPGIKRGNI SAEEEELIMR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT SLSKKLRAGD 120 QTPEKQVVIN KSKGKKMVEA AGNSALSTLS SKVSQEPPRV IRTKAVRCTR VFFPPQQGSE 180 CHHVDETMIN KREEPALASS SSGFNCTPST LSSIIQADGD YSNFLTDLDI GELLSMPDFL 240 QFCSEGIDHQ ENDNVIMDGE DLPWFSDYPF SAPYEIMLPE STDDRCNT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010262233.1 | 0.0 | PREDICTED: transcription repressor MYB6-like | ||||
Swissprot | P10290 | 4e-63 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | A0A1U8AIF6 | 0.0 | A0A1U8AIF6_NELNU; transcription repressor MYB6-like | ||||
STRING | XP_010262233.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 1e-62 | MYB family protein |