PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_010652-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB | ||||||||
Protein Properties | Length: 156aa MW: 17729.5 Da PI: 10.5422 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.6 | 5e-07 | 14 | 43 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 rg+WT Ed +l+d+++ +G g W+ +++ NNU_010652-RA 14 RGAWTVYEDRILIDYINTHGDGKWRELPKK 43 89***********************99886 PP | |||||||
2 | Myb_DNA-binding | 56.7 | 5.7e-18 | 48 | 92 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +teE+el+++++k+lG++ W++Ia +++ gRt++++k++w++ NNU_010652-RA 48 RGNISTEEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 92 7999******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-10 | 5 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.748 | 9 | 42 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 4.21E-19 | 12 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.669 | 43 | 97 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-22 | 44 | 97 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-16 | 47 | 95 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-16 | 48 | 93 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.30E-12 | 52 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MGRSPCCVKE GLNRGAWTVY EDRILIDYIN THGDGKWREL PKKADIKRGN ISTEEEELII 60 RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN TNLSKKLQAG HHTPEKQVVI NKSKGKKMVE 120 AAGTSALSTL SPKVSQEPPR VIRTKDVRCT RVFFPP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-16 | 12 | 97 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010262233.1 | 1e-95 | PREDICTED: transcription repressor MYB6-like | ||||
Swissprot | Q9S9K9 | 1e-43 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A1U8AIF6 | 3e-94 | A0A1U8AIF6_NELNU; transcription repressor MYB6-like | ||||
STRING | XP_010262233.1 | 5e-95 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 4e-46 | myb domain protein 3 |