PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_010650-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB | ||||||||
Protein Properties | Length: 199aa MW: 22865.9 Da PI: 9.9574 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.9 | 1.4e-19 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed++l++ ++ +G ++Wk+Ia+t g++R++k+c++rw +yl NNU_010650-RA 16 RGAWTAQEDQKLAQIIEVHGAKRWKSIAATAGLNRSGKSCRLRWMNYL 63 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 3.9e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l NNU_010650-RA 69 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 114 78999*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.335 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.6E-30 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-14 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-17 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-24 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.20E-10 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 25.672 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-25 | 71 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.85E-10 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MALVMTDGTP KKELNRGAWT AQEDQKLAQI IEVHGAKRWK SIAATAGLNR SGKSCRLRWM 60 NYLRPNIKRG NISDQEEDLI LRLHKLLGNR WSLIAGRLPG RTDNEIKNYW NSHLSKKIIN 120 QQTEEKPSRV ARTTTTTCWS KRRKTCDSEK DQIQVTEDGT SKGHEGSVNN IDVDELLDFS 180 VEGPLMSLEW LRKFSEFKE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-29 | 13 | 118 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010261928.1 | 1e-146 | PREDICTED: transcription factor MYB114-like | ||||
Swissprot | Q9FJA2 | 2e-50 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | A0A1U8A469 | 1e-145 | A0A1U8A469_NELNU; transcription factor MYB114-like | ||||
STRING | XP_010261928.1 | 1e-145 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 1e-52 | MYB family protein |