PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010442-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bZIP
Protein Properties Length: 433aa    MW: 45849.6 Da    PI: 6.0638
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010442-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.75.2e-23328390163
                    XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                    e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL+++v+ L++eN++L++e+ +++ e+++l s++
  NNU_010442-RA 328 ERELKRQRRKQSNRESARRSRLRKQAECEELAQRVEILSEENSTLRSEVTRIRSEYEQLLSQN 390
                    89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.3E-35196IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.4E-20135193No hitNo description
PfamPF165961.4E-17210291No hitNo description
Gene3DG3DSA:1.20.5.1703.3E-19321389No hitNo description
SMARTSM003388.5E-23328392IPR004827Basic-leucine zipper domain
PfamPF001701.8E-21328390IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.553330393IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.13E-12331388No hitNo description
CDDcd147022.97E-23333383No hitNo description
PROSITE patternPS000360335350IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MGSSEMDSSS KAPKTPTTQE QPSATTTAAV YPEWAGFQAY SPLPPHGFFH SSVASSPQAH  60
PYMWGAQHLM PPYGTPPPPY VAMYPHGGLY AHPSIPPGSH PFAPYAMPSP NGNADASGTA  120
PGGAEADGKS SDGKERSSLK RSKESLGSLN VITGKNNDLS KTAGASANGV FSQSAESASD  180
GSSEGSDANS QNVCISKLWL FYSACLFSLD GQDSQQKASE QDSMEGVTGE ASQNGNAARG  240
PLNGVPRTPP SAMLNPAVAI MPIPAGAPGM VAGPATNLNI GMDYWGAPTS SIPVLRGKVP  300
SAPVAGGMVP TVVGSREGVQ SELWMQDERE LKRQRRKQSN RESARRSRLR KQAECEELAQ  360
RVEILSEENS TLRSEVTRIR SEYEQLLSQN ASLKERLGET PKGQEDSRTG KNDQHSGNDN  420
QQAVETELVQ SGH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1344350RRSRLRK
2344351RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261552.10.0PREDICTED: bZIP transcription factor 16 isoform X1
RefseqXP_010261553.10.0PREDICTED: bZIP transcription factor 16 isoform X1
RefseqXP_010261554.10.0PREDICTED: bZIP transcription factor 16 isoform X1
RefseqXP_010261555.10.0PREDICTED: bZIP transcription factor 16 isoform X1
RefseqXP_019053816.10.0PREDICTED: bZIP transcription factor 16 isoform X1
SwissprotQ501B21e-141BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A1U8A5630.0A0A1U8A563_NELNU; bZIP transcription factor 16 isoform X1
STRINGXP_010261549.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-110basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]