PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010321-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WRKY
Protein Properties Length: 365aa    MW: 40100.4 Da    PI: 4.8413
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010321-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.4e-31165223259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp +++itY+ eHnh+
  NNU_010321-RA 165 SDMWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERSRTDPGMFIITYTAEHNHP 223
                    79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-31150225IPR003657WRKY domain
PROSITE profilePS5081134.314159225IPR003657WRKY domain
SuperFamilySSF1182902.35E-26162225IPR003657WRKY domain
SMARTSM007742.1E-37164224IPR003657WRKY domain
PfamPF031061.5E-25166223IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEVDWDLQAV VRGCTMGATT TTTTTTTTAT TSFTEDPLSC FSPLALEQDD YLLRSPDLFQ  60
SRTAIEELEE LYKPFFPKLQ SLSAQNLTTS FKVPLGELKD QQQQQQPQLQ QQQQQRKQPQ  120
GSVVGTAPAA AATTTTAHSQ APRSKRRKNQ QKRVVCQVPA EGLSSDMWAW RKYGQKPIKG  180
SPYPRGYYRC SSSKGCLARK QVERSRTDPG MFIITYTAEH NHPLPTHRNS LAGSTRHKFP  240
TPQRPTTGEP DTNTTKPSCA SPTSTGGLSP TTPSTTSVED EQPMKQESRE DDGEEMVEDD  300
DEDELLIPDV INDDFFMGLE ELAGPTSVTP SSTGPAFDDC FTEHLSEPSP VPWHAQNAAA  360
AAGGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-22155226880Disease resistance protein RRS1
5w3x_D5e-22155226880Disease resistance protein RRS1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261384.10.0PREDICTED: WRKY transcription factor 22-like
TrEMBLA0A1U8A8E90.0A0A1U8A8E9_NELNU; WRKY transcription factor 22-like
STRINGXP_010261384.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-58WRKY family protein