PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_010191-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bZIP

Protein Properties

Length: 361aa MW: 40660.1 Da PI: 7.6543

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_010191-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.7	2.2e-12	74	121	2	53
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 +++k+ rr+++NReAAr+sR+RKka++++Le +L++ + ele+l+ NNU_010191-RA 74 PPDKVLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQ----ELERLR 121 5799***************************96555554443....444443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.4E-8	70	123	No hit	No description
SMART	SM00338	5.0E-8	73	136	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.5E-9	75	118	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.979	75	119	IPR004827	Basic-leucine zipper domain
CDD	cd14708	6.12E-23	77	129	No hit	No description
SuperFamily	SSF57959	5.38E-8	77	121	No hit	No description
PROSITE pattern	PS00036	0	80	95	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.5E-31	163	238	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MSSPSTQFAT SRRMGIYEPV HQISMWAEPF KADCSPNTGT STIIEVDTKM DKSEDTSQGT 60 IGSSKKYDQE ANKPPDKVLR RLAQNREAAR KSRLRKKAYV QQLESSRLKL TQLEQELERL 120 RQQGVYIGGS FDTSHLGLSG TVNTGTDAFE MEYGHWVEEQ SRQVNELRTA LQAHVTDIDL 180 RLLVDSGMNH YYDLFRMKAT AAKADVFYLI SGMWRTSAER FFLWIGGFRP SELLKVLTPQ 240 LDPLTEQQVV DVYNLQQSSQ QAEDALSQGL LKLQQTLSET LASDTVVAGS YMSQMTTAMG 300 KLEALVSFVN QADHLRQQTL LQMSRILTTR QAARGLLALG DYFQRLRALS SLWAARPCEP 360 A

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MSSPSTQFAT SRRMGIYEPV HQISMWAEPF KADCSPNTGT STIIEVDTKM DKSEDTSQGT  60
IGSSKKYDQE ANKPPDKVLR RLAQNREAAR KSRLRKKAYV QQLESSRLKL TQLEQELERL  120
RQQGVYIGGS FDTSHLGLSG TVNTGTDAFE MEYGHWVEEQ SRQVNELRTA LQAHVTDIDL  180
RLLVDSGMNH YYDLFRMKAT AAKADVFYLI SGMWRTSAER FFLWIGGFRP SELLKVLTPQ  240
LDPLTEQQVV DVYNLQQSSQ QAEDALSQGL LKLQQTLSET LASDTVVAGS YMSQMTTAMG  300
KLEALVSFVN QADHLRQQTL LQMSRILTTR QAARGLLALG DYFQRLRALS SLWAARPCEP  360
A

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00586	DAP	Transfer from AT5G65210	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010261147.1	0.0	PREDICTED: transcription factor TGA1-like isoform X2
Swissprot	Q39237	1e-177	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A1U8A7V1	0.0	A0A1U8A7V1_NELNU; transcription factor TGA1-like isoform X2
STRING	XP_010261144.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-166	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]