PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_010111-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | NF-YC | ||||||||
Protein Properties | Length: 140aa MW: 15649.1 Da PI: 9.6809 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 45.8 | 1.3e-14 | 6 | 94 | 11 | 98 |
NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98 e++t+ + ++Pl r+kki+k d+++k++ +ea l+s + +lf+ l+ +s a e+kr+ +k + av++ + + dfl+d p NNU_010111-RA 6 EENTETLQPAFPLGRVKKIMKLDNEIKKVNSEALLLVSLSTDLFLRFLAEKSAGVAVEKKRKIVKLEHLRIAVKKHEpTKDFLLDSLPM 94 6778888999***************************************************************9875389*****9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.0E-18 | 8 | 79 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.68E-16 | 11 | 93 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.0E-16 | 16 | 78 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MADAEEENTE TLQPAFPLGR VKKIMKLDNE IKKVNSEALL LVSLSTDLFL RFLAEKSAGV 60 AVEKKRKIVK LEHLRIAVKK HEPTKDFLLD SLPMPSQVST RPSTAESRPK PTVEKAVPAG 120 THRIDDFFHK CSNGISNQTE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010261048.1 | 3e-98 | PREDICTED: chromatin accessibility complex protein 1 | ||||
TrEMBL | A0A1U8A3V6 | 8e-97 | A0A1U8A3V6_NELNU; chromatin accessibility complex protein 1 | ||||
STRING | XP_010261048.1 | 1e-97 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 5e-40 | nuclear factor Y, subunit C13 |