PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009618-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 486aa    MW: 54117.4 Da    PI: 4.863
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009618-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.12.7e-122773413195
                    .--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
             B3  31 eesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                    +e++++t++d  s ++W +k+++  ++ks++yvl+ ++ +Fvk++gLk+gD+++++ d++++f  ++ 
  NNU_009618-RA 277 KEGFQITVRDlVSTKVWHMKYRFwpNNKSRMYVLE-NTGDFVKQKGLKVGDSILLYQDEDEQF--FIC 341
                    46788*****8888*******9989999999**99.********************5555555..655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.6E-11255346IPR003340B3 DNA binding domain
CDDcd100171.12E-13264340No hitNo description
Gene3DG3DSA:2.40.330.101.9E-15264346IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-13265344IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-9277344IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MENSVPVPQP VTATPTAFTI AVIHPTTTRL TQAEMLRNKE YGKELQLGLS PPAASAPPPP  60
TVVVPTPNHP FSTLDSQSSI STSQDHHHHQ QYHYPNEPQC HLSEPQYYSY LFSPDYSSSS  120
PIFPVFPLMV DPSAVDNGLP SSLVGGLLDG YYPDEKFIDN GLENSCFLES MTQSQGPQQS  180
LWGSITKAAR SKRRIARRMS STSSSSRVGH LNQTSSSSFS TSLGSFLSPP PNKNISFSAT  240
DTSSNSDTDN KRRELFTFTT PDNKKDSEAN LPTLTVKEGF QITVRDLVST KVWHMKYRFW  300
PNNKSRMYVL ENTGDFVKQK GLKVGDSILL YQDEDEQFFI CAKRAEEPPL ELLKKELEEC  360
KVEHRAHSSE RRMMEEDEHC DPFVVLETEV DTQEKVKLGK GKMIMLEDYG CSDNDTCGGS  420
SSTQLGKEVV ESQSLNKEAA GDFDCVFSEL EMLPNFGACD LSLYNDFMSD FSDPGGENRV  480
VAKVSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A1e-2426434132109B3 domain-containing transcription factor LEC2
6j9c_D1e-2426434132109B3 domain-containing transcription factor LEC2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010272400.11e-178PREDICTED: B3 domain-containing protein IDEF1
TrEMBLA0A1U8AWJ01e-176A0A1U8AWJ0_NELNU; B3 domain-containing protein IDEF1
STRINGXP_010260258.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.12e-24B3 family protein