PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009511-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB
Protein Properties Length: 265aa    MW: 30219.9 Da    PI: 6.6232
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009511-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding475.8e-151064148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48
                     +g+WT++Ed++lv+ v ++G ++W+ Ia+  g       + Rt+k+c++rw +yl
    NNU_009511-RA 10 KGPWTEQEDLQLVCFVGLFGERRWDFIAKVSGskvagdtTARTGKSCRLRWVNYL 64
                     79***************************************************97 PP
2Myb_DNA-binding56.47e-1870115148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr+T++E++l ++++ ++G++ W++Iar+++ gRt++++k++w++++
    NNU_009511-RA  70 RGRMTPQEEQLVLELHSRWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 115
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3564IPR017930Myb domain
SuperFamilySSF466891.91E-278111IPR009057Homeodomain-like
SMARTSM007171.7E-13966IPR001005SANT/Myb domain
PfamPF002493.4E-141064IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-181171IPR009057Homeodomain-like
CDDcd001676.65E-101264No hitNo description
PROSITE profilePS5129426.58365119IPR017930Myb domain
SMARTSM007171.3E-1669117IPR001005SANT/Myb domain
PfamPF002498.0E-1670114IPR001005SANT/Myb domain
CDDcd001672.38E-1172115No hitNo description
Gene3DG3DSA:1.10.10.605.8E-2472118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MKMVQEEIRK GPWTEQEDLQ LVCFVGLFGE RRWDFIAKVS GSKVAGDTTA RTGKSCRLRW  60
VNYLHPGLKR GRMTPQEEQL VLELHSRWGN RWSRIARKLP GRTDNEIKNY WRTHMRKKAQ  120
ERKRSISPSS SSSQCSSPST NNPPAASSIS LPETHNGEGI SSLHNCGSST DLSAVRGEVS  180
EEADAIWYPM DDQIWKEFPS VEEAISGPVY EGRKDEGCSS YPPMASPLWD YCCSDTLWRM  240
DEEEIKMILP MADHFVSTYG HDTRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2771191105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-27211950159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-27211950159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00600PBMTransfer from AT5G59780Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260059.10.0PREDICTED: transcription factor MYB59-like isoform X1
SwissprotQ4JL843e-80MYB59_ARATH; Transcription factor MYB59
TrEMBLA0A1U7ZZN50.0A0A1U7ZZN5_NELNU; transcription factor MYB59-like isoform X1
STRINGXP_010260059.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.33e-80myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]