PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_009436-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | WOX | ||||||||
Protein Properties | Length: 250aa MW: 27613.9 Da PI: 7.344 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.5 | 1.8e-21 | 17 | 77 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++tkeq+ +Le+l+++ r+p+ae++++++++l +++ ++V++WFqN++a++++ NNU_009436-RA 17 STRWNPTKEQISILESLYRQgIRTPTAEQIQQISSRLrmygHIEGKNVFYWFQNHKARQRQ 77 58*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 117.3 | 7.1e-38 | 16 | 79 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 a+tRW+Pt+eQi iLe+ly++G+rtP++e+iq+i+++L+ yG+ie+kNVfyWFQN+kaR+rqkq NNU_009436-RA 16 ASTRWNPTKEQISILESLYRQGIRTPTAEQIQQISSRLRMYGHIEGKNVFYWFQNHKARQRQKQ 79 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.402 | 13 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-7 | 15 | 82 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.57E-13 | 16 | 85 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.0E-9 | 18 | 77 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.1E-19 | 18 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.69E-8 | 18 | 79 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010654 | Biological Process | apical cell fate commitment | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MEDKSVELLA SAGSPASTRW NPTKEQISIL ESLYRQGIRT PTAEQIQQIS SRLRMYGHIE 60 GKNVFYWFQN HKARQRQKQK QESMVYANQF FHKAAPVLVH SPRPFVCAPF YMPQTGIGFY 120 PPHPKVLLPG GVKRKPKMDK MEKRKGTGGG GDGVSAGAGY EAAQAGFYNM YKDDDNEGLV 180 GTTDGHHETL TLFPLHPTGV LEDKIENHFP STSAENSNAS TSSGSNSVEV VSADQPLIDF 240 FAENGSVESY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010260182.1 | 1e-173 | PREDICTED: WUSCHEL-related homeobox 2 | ||||
TrEMBL | A0A1U8A1U9 | 1e-172 | A0A1U8A1U9_NELNU; WUSCHEL-related homeobox 2 | ||||
STRING | XP_010260182.1 | 1e-173 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 1e-43 | WUSCHEL related homeobox 2 |