PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009427-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ARF
Protein Properties Length: 988aa    MW: 109059 Da    PI: 6.3934
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009427-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.45.5e-23129230199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f+k+lt sd++++g +++p++ ae++       +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++
  NNU_009427-RA 129 FCKTLTASDTSTHGGFSVPRRAAEKIfphldfsQQPPA--QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLSGDSVLFI--RDEK 220
                    99*****************************8544444..49************************************************..5688 PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                    ++l+++++r 
  NNU_009427-RA 221 QQLLLGIRRV 230
                    8899999985 PP
2Auxin_resp114.59.4e-38255338183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+fete+  +rr+ Gt++g+sdldpvrW+nS+W +L+
  NNU_009427-RA 255 AAHAAANHSPFTVFYNPRASPSEFVIPLAKYYKAVYsNQISLGMRFRMMFETEELGTRRYVGTITGISDLDPVRWKNSQWHNLQ 338
                    79********************************9989*******************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-43119258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.1E-40121244IPR015300DNA-binding pseudobarrel domain
CDDcd100172.07E-18128220No hitNo description
SMARTSM010191.4E-21129231IPR003340B3 DNA binding domain
PROSITE profilePS5086311.899129231IPR003340B3 DNA binding domain
PfamPF023621.0E-20129230IPR003340B3 DNA binding domain
PfamPF065079.3E-33255338IPR010525Auxin response factor
PfamPF023095.0E-7855940IPR033389AUX/IAA domain
PROSITE profilePS5174528.166856940IPR000270PB1 domain
SuperFamilySSF542774.58E-7868934No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 988 aa     Download sequence    Send to blast
MKALANSAVS TANACEGERK NINSELWHAC AGPLVTMPPV GSYVVYFPQG HSEQVAASMQ  60
KDVDAHIPNY PNLPSKLICL LHNVTLHADT ETDEVYAQMT LQPVSTFDKE ALLQSDLALK  120
STRPQTEFFC KTLTASDTST HGGFSVPRRA AEKIFPHLDF SQQPPAQELV ARDLHDNVWT  180
FRHIYRGQPK RHLLTTGWSL FVSGKRLLSG DSVLFIRDEK QQLLLGIRRV NRQPTNISSS  240
VLSSDSMHIG ILAAAAHAAA NHSPFTVFYN PRASPSEFVI PLAKYYKAVY SNQISLGMRF  300
RMMFETEELG TRRYVGTITG ISDLDPVRWK NSQWHNLQVG WDESTAGERR NRVSIWEIEP  360
VAAPFFICPP PFFRSKRPRQ PGMPDDEYSD LDNLFKRTMP WLGDDICIKD SHTQNAVLPG  420
LSLVQWMNMQ NNPSLGNSTL QSDYLRSLAG PVLQNLAATD ISRQLGLQGP QVLQPNNPNF  480
NIQRPPQQIQ QLEQITKLPT SLNQLGSVMQ PQQQLDDISQ QPRQNLINQT LPSNQAKAQL  540
LQSQQNMIPQ HITNNNAQPC IQFSHPAQQQ HQAQQKLQQQ LPLPPALTTN MLLTTGSNIL  600
TATGGAQSGI TDELPSCSTS LSTNNCLNVA QPILSSRAYR STSLTEEMSQ STVMPSSPKT  660
LEAMSSGPNL AKDLQQKYVV KPSIPISKSQ TQGAVTPQTC LNATSQMDCL DTSSATSVCL  720
SQTDGPSQNF PLSSFDQQSM LFKDASQDEE VQTDPRNNTL FGVNIDGPLG IPSTPDPLLA  780
KGVGSGNDFL NNLSSGGMLA NHGNSKETQQ QLSSVVSQSF GVPDMAFNSI DSTINDSGFL  840
GRGTWTPPTP QFQRMRTFTK VYKRGAVGRS IDITRYSGYD ELKQDLARRF GIEGQLEDQQ  900
RIGWKLVYVD HENDVLLVGD DPWEEFVNCV RCIKILSPQE VRQMSLDGDF GTGVLPIQAC  960
SSSDGGIAWR NGQCDQNSSN PSAGSYDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1661735945388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021989699.10.0auxin response factor 19-like isoform X2
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A1D6GVF50.0A0A1D6GVF5_MAIZE; Auxin response factor
STRINGOMERI02G04130.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19