PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009379-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 358aa    MW: 37278.5 Da    PI: 6.7025
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009379-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.7e-06258279223
                    EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    +C++C+k Fsr  nL+ H r H
  NNU_009379-RA 258 VCEICKKEFSREQNLQLHRRGH 279
                    8*******************88 PP
2zf-C2H214.78.7e-05333355123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k+F  + + k+H +++
  NNU_009379-RA 333 FKCEKCSKPFAVRTDWKTHTKKC 355
                    89******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.242257279IPR007087Zinc finger, C2H2
SMARTSM003550.0084257279IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.49E-6258279No hitNo description
Gene3DG3DSA:3.30.160.603.3E-5259279IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280259279IPR007087Zinc finger, C2H2
SMARTSM0035591298328IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.49E-6328353No hitNo description
SMARTSM0035567333353IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058333358IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MSLNLKKTPT ITVFKDSGEA EADTVSSGNG EGKSSFVSDG EAGVLSSGNQ ADPSLSAPGK  60
EVTLSASGKQ AEQPSSAPEE EATVLSSGNE KAPSPLASEG EATVSSSGNQ IAPPYSGVGA  120
TMPCSGNQTV PPSTGSAGAT VICSGNQRAP PTGSREEGTP LSSGGDQAAP SMGSGEVTLF  180
PFGSQPMLPS SDSGEVIVFF SGDPTAPHSA DSGGFVVFSP SSDQTAPPRR KRLPGTPDPD  240
AEVIALSPET LSSTDQLVCE ICKKEFSREQ NLQLHRRGHD LPWKLGGGPK KEVRKQVFVC  300
PEPSCIHHDP SRALGDLTGI KKHYLRKHCE KKFKCEKCSK PFAVRTDWKT HTKKCKAG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259846.10.0PREDICTED: uncharacterized protein LOC104599146
RefseqXP_010259847.10.0PREDICTED: uncharacterized protein LOC104599146
RefseqXP_010259848.10.0PREDICTED: uncharacterized protein LOC104599146
RefseqXP_010259850.10.0PREDICTED: uncharacterized protein LOC104599146
TrEMBLA0A1U7ZZ530.0A0A1U7ZZ53_NELNU; uncharacterized protein LOC104599146
STRINGXP_010259846.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.29e-56C2H2-like zinc finger protein