PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008848-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Trihelix
Protein Properties Length: 311aa    MW: 35151.6 Da    PI: 10.5753
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008848-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.91.5e-1461146185
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                    +W++  + +Li+a  e+  +l+rg+lk+++W+ev++++      +++ ++ +qCk++++ l+k+yk +k+  +++     +++++fd++
  NNU_008848-RA  61 CWSEGATSTLIDAWGERYIELNRGNLKQKHWQEVADVVtsreDYTKVPKTDIQCKNRIDTLKKKYKVEKAKISSG---FPTKWVFFDRI 146
                    7*************************************86555556677889******************99986...66779***987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.2E-2559147No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MESNPTSPAS SDHQIGPSQP VTVAAPPPPA RQSLTLALPI QQPRMTSTIT GGGVTHGRED  60
CWSEGATSTL IDAWGERYIE LNRGNLKQKH WQEVADVVTS REDYTKVPKT DIQCKNRIDT  120
LKKKYKVEKA KISSGFPTKW VFFDRIYQLI GPSSRKNEDL DNNTPSGPTP KSSAAAAVRN  180
FRSLRQPQLN QRESTNSGDS TDGLPPATNN VNGKRWRFKR ESIRSGWGGK SESSMRELSR  240
AILKFGEVYE KVEKSKLEQM MEMEKQRMEL TREFELQRLR FFMKTQIELS QLKHGRRVVV  300
GNGRRNSNNS G
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258956.10.0PREDICTED: trihelix transcription factor ASIL2-like
SwissprotQ9LJG81e-47ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A1U8AA880.0A0A1U8AA88_NELNU; trihelix transcription factor ASIL2-like
STRINGXP_010258956.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.13e-49sequence-specific DNA binding transcription factors