PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008823-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 274aa    MW: 30339.4 Da    PI: 6.8466
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008823-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.15.1e-18181215135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  NNU_008823-RA 181 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 215
                    *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.6E-821269IPR016679Transcription factor, GATA, plant
SMARTSM004014.7E-15175225IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.583175211IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-14178237No hitNo description
Gene3DG3DSA:3.30.50.107.5E-14179213IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.05E-14180227No hitNo description
PfamPF003207.5E-16181215IPR000679Zinc finger, GATA-type
PROSITE patternPS003440181206IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEMYGLPAPD FFRIDDLLDF SNDGDLFSSS SSSSSSSSFT PDPDLLHLPP TENNTGNRPS  60
ATADTSNRSN SFTDDLCVPS DDVAELEWLS KFVDDSFTDF SMSETVATTN FRPDTASVPG  120
RARSKRSRAT STHISWTSLP ESNVPATGKS RLGKESSTAS PDITREQLAI ASSSSSGVRK  180
CTHCASEKTP QWRTGPLGPK TLCNACGVRY KSGRLVPEYR PLASPTFVWS QHSNSHRKVM  240
ELRRQKEILR QEESSNQYHH QFSSLHHHPD FKVC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258899.10.0PREDICTED: GATA transcription factor 4-like
SwissprotO497411e-68GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A1U7ZWN90.0A0A1U7ZWN9_NELNU; GATA transcription factor
STRINGXP_010258899.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.11e-61GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]