PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_008810-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | Dof | ||||||||
Protein Properties | Length: 155aa MW: 16793.1 Da PI: 10.0961 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121 | 4.1e-38 | 13 | 69 | 6 | 62 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvP+Ggg+rk ++++ NNU_008810-RA 13 PNCPRCASANTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPIGGGCRKTRRAK 69 68***************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-28 | 1 | 67 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.5E-32 | 13 | 67 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.351 | 13 | 67 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 15 | 51 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MDHRWKPTVE VAPNCPRCAS ANTKFCYYNN YSLSQPRYFC KGCRRYWTKG GSLRNVPIGG 60 GCRKTRRAKS SKFPPTKAVS ISLGFSGDGP SSVANPMVVP TTAATDASNI DLAIVFAKFL 120 NQNSSLGSGL ATPEFSSEKE VDASLNISTL PTRMN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010247650.1 | 1e-100 | PREDICTED: dof zinc finger protein DOF1.2 | ||||
Swissprot | Q9SVC5 | 7e-40 | DOF35_ARATH; Dof zinc finger protein DOF3.5 | ||||
TrEMBL | A0A1U7Z5Q1 | 2e-98 | A0A1U7Z5Q1_NELNU; dof zinc finger protein DOF1.2 | ||||
STRING | XP_010247650.1 | 3e-99 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 3e-42 | Dof family protein |