PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008517-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 249aa    MW: 27709.9 Da    PI: 4.7678
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008517-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-088322348
                     -HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                     +W++Ia++++  Rt++++k++w+++l
    NNU_008517-RA  8 RWAAIASYLP-QRTDNDIKNYWNTHL 32
                     5*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.555136IPR017930Myb domain
SuperFamilySSF466894.29E-8638IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-12738IPR009057Homeodomain-like
CDDcd001674.02E-6832No hitNo description
PfamPF002496.7E-7832IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MKLWFDCRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKFE TGLDGNAKDG FSDSQSMTKG  60
QWERRLQTDI HMARKALCEA LSLEKPSSLC DLKASSGFYS MMRPNQATTY ASSTENISRL  120
LQGWMKNSPK SGRSTSETTQ NSVNNMTGTD STYSEGTPSA SNNTDIVSPE ALESLLGLDS  180
STPGVSQSAS LDETTNIKQE TNTFQDECKP KMETQVPLSV LEKWLFDEGV AQAEEDLIGM  240
SIYGTAEMF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258354.11e-177PREDICTED: myb-related protein 306
SwissprotP813926e-53MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A1U8A8R51e-176A0A1U8A8R5_NELNU; myb-related protein 306
STRINGXP_010258354.11e-177(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.25e-47myb domain protein 96
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]