PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_008469-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

NAC

Protein Properties

Length: 356aa MW: 40269.6 Da PI: 7.4959

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_008469-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.4	2.2e-56	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeel+++yL kkv ++++ + ++i evd++++ePwd+p+++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ + NNU_008469-RA 16 LPPGFRFHPTDEELITHYLSKKVVDSSFYA-RAIGEVDLNNCEPWDMPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATAAGYWKATGKDKEIYR-G 109 79***********************999.89***********99999*************************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 ++lvg+kktLvfy+grapkgekt+Wvmheyrle NNU_008469-RA 110 KTLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 142 99***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-64	13	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.675	16	166	IPR003441	NAC domain
Pfam	PF02365	6.6E-30	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MENVSGFSKE EEQIDLPPGF RFHPTDEELI THYLSKKVVD SSFYARAIGE VDLNNCEPWD 60 MPRRAKMGEK EWYFFCVRDR KYPTGLRTNR ATAAGYWKAT GKDKEIYRGK TLVGMKKTLV 120 FYRGRAPKGE KTNWVMHEYR LEGKFSISNL PKTAKNEWVI CRVFQKSSGG KKIHIPGLVR 180 MSSLSDELAP STLPPLMDSS PYNSKTKASV AETAHVTCFS NPMEDRKNQE EMIDCFNSPL 240 FASSTNPFDP SPASLLFSKF NLPNSFYTTQ GATSLGNLQY PGSVLMQDQT FLRALLENHG 300 STMMKQNFKT EREMVSISQE TGLSTEMNTE ISSVVSNHED PSTSAGPVDL DCLWNY

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MENVSGFSKE EEQIDLPPGF RFHPTDEELI THYLSKKVVD SSFYARAIGE VDLNNCEPWD  60
MPRRAKMGEK EWYFFCVRDR KYPTGLRTNR ATAAGYWKAT GKDKEIYRGK TLVGMKKTLV  120
FYRGRAPKGE KTNWVMHEYR LEGKFSISNL PKTAKNEWVI CRVFQKSSGG KKIHIPGLVR  180
MSSLSDELAP STLPPLMDSS PYNSKTKASV AETAHVTCFS NPMEDRKNQE EMIDCFNSPL  240
FASSTNPFDP SPASLLFSKF NLPNSFYTTQ GATSLGNLQY PGSVLMQDQT FLRALLENHG  300
STMMKQNFKT EREMVSISQE TGLSTEMNTE ISSVVSNHED PSTSAGPVDL DCLWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-55	13	172	17	174	NAC domain-containing protein 19
3swm_B	4e-55	13	172	17	174	NAC domain-containing protein 19
3swm_C	4e-55	13	172	17	174	NAC domain-containing protein 19
3swm_D	4e-55	13	172	17	174	NAC domain-containing protein 19
3swp_A	4e-55	13	172	17	174	NAC domain-containing protein 19
3swp_B	4e-55	13	172	17	174	NAC domain-containing protein 19
3swp_C	4e-55	13	172	17	174	NAC domain-containing protein 19
3swp_D	4e-55	13	172	17	174	NAC domain-containing protein 19
4dul_A	4e-55	13	172	14	171	NAC domain-containing protein 19
4dul_B	4e-55	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010258290.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-154	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1U8A0S9	0.0	A0A1U8A0S9_NELNU; NAC domain-containing protein 100-like
STRING	XP_010258290.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-157	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]