PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008123-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 266aa    MW: 29363.2 Da    PI: 7.9573
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008123-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.67.3e-18196230135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  NNU_008123-RA 196 CTHCLSQKTPQWRAGPLGPKTLCNACGVRFKSGRL 230
                    *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.095190226IPR000679Zinc finger, GATA-type
SMARTSM004013.3E-15190244IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-15192253No hitNo description
Gene3DG3DSA:3.30.50.101.2E-13194228IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.91E-12195242No hitNo description
PROSITE patternPS003440196221IPR000679Zinc finger, GATA-type
PfamPF003201.4E-15196230IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDFFPNVSVS AGLPSELPPE QVISPACPKL GAFSTSLDDL FSCENTEGDV SLEWLSIFVE  60
DCLSSTGNCV PLPTNIQDQE NQAPKPSKKI HQTPCLQEFV IPGKARSKRK RSTTTPLISW  120
SHQDPQNQPL HVTSSDPPLL HQTYWLADSE LIVPKKENSS SSRNEEEKAE EKMVGKDRTG  180
SSSSVVEGSI GQPRRCTHCL SQKTPQWRAG PLGPKTLCNA CGVRFKSGRL LPEYRPAKSP  240
TFVSYKHSNS HKKVLEMRML SSVSSE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257696.10.0PREDICTED: GATA transcription factor 2-like
TrEMBLA0A1U7ZVJ30.0A0A1U7ZVJ3_NELNU; GATA transcription factor 2-like
STRINGXP_010257696.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.19e-37GATA transcription factor 9