PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007795-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Trihelix
Protein Properties Length: 306aa    MW: 34587.9 Da    PI: 9.6034
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007795-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.21e-1339122186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W++  + +Liea  ++  +l+rg+l++++W+ev++++  r+ g+  +++ +qCk++++ l+k+yk +k   +       s++p++++l+
  NNU_007795-RA  39 CWSEGATATLIEAWGNRYLHLSRGNLRQKDWKEVADAVngRQDGLksRKTDIQCKNRIDTLKKKYKLEKSKPGP------SKWPFYSRLD 122
                    7*************************************996666643679****************99988886......58*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.3E-2637124No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MMRDSMDDHA AHNIVRPHHH HHPLHSFPHG GGGGGREDCW SEGATATLIE AWGNRYLHLS  60
RGNLRQKDWK EVADAVNGRQ DGLKSRKTDI QCKNRIDTLK KKYKLEKSKP GPSKWPFYSR  120
LDQLIGTTAT ATNKKITPHP LPSFHKSAPV SFTLKQSKDK INPNPNAAVY SGGSSSKSKL  180
NSAGSTESSR GGSGDERDDD MVFDESVKKR QIDRDSSDAA AFRELARAIL KFGEIYERIE  240
SSKQEQIMEL ERQRMEFTKD LEFQRMHMFM EAQLELEKMK RPKYSSGTGE LHASSPCLLC  300
LDYSRA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257090.10.0PREDICTED: trihelix transcription factor ASIL1 isoform X3
TrEMBLA0A1U8A5K80.0A0A1U8A5K8_NELNU; trihelix transcription factor ASIL1 isoform X3
STRINGXP_010257087.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.14e-60sequence-specific DNA binding transcription factors