PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_007495-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB

Protein Properties

Length: 308aa MW: 35152.3 Da PI: 10.2102

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_007495-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.6	1.6e-09	29	75	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT eE +++ da + + ++ +W ++a++++ g+t +++ ++ + NNU_007495-RA 29 AWTHEENKRFEDALAVYDKDtpdRWMKVAAMIP-GKTVEDVMRQYNEL 75 7******************************.*******99987 PP
2	Myb_DNA-binding	42.5	1.5e-13	136	180	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W+++E+ l++ + k++G+g+W+ I+r++ +Rt+ q+ s+ qky NNU_007495-RA 136 PWSEDEHRLFLLGLKRYGKGDWRNISRKFVVTRTPTQVASHAQKY 180 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.5E-5	24	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.71E-12	25	78	IPR009057	Homeodomain-like
PROSITE profile	PS51293	8.937	25	80	IPR017884	SANT domain
SMART	SM00717	8.4E-9	26	78	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-7	29	76	IPR001005	SANT/Myb domain
CDD	cd00167	1.10E-7	29	76	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.2E-11	127	185	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.589	129	185	IPR017930	Myb domain
SuperFamily	SSF46689	1.08E-15	131	184	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.5E-17	132	184	IPR006447	Myb domain, plants
SMART	SM00717	1.0E-11	133	183	IPR001005	SANT/Myb domain
Pfam	PF00249	3.2E-11	136	180	IPR001005	SANT/Myb domain
CDD	cd00167	3.03E-10	136	181	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MRSGMEILSP ASYHHTNSNW FLHERKSRAW THEENKRFED ALAVYDKDTP DRWMKVAAMI 60 PGKTVEDVMR QYNELLVDVG HIEAGRIPIP GYRTPSFTLD WTNNRGFDGF KQSFSPGGRR 120 ATSGRPSDQE RKKGVPWSED EHRLFLLGLK RYGKGDWRNI SRKFVVTRTP TQVASHAQKY 180 FIRQLSGGKD KRRSSIHDIT TVNITDTRPP SPDNDRAPSP DHSIVLPQQS NLAVTPKVQF 240 DWSQPNNGPA MVFNQTNGNM FMSPSSGVAS YGHKLQGQHQ PREASYGYHF GPQHSIFQMQ 300 SSQYHQIA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	1e-19	28	94	9	75	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010256655.1	0.0	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	1e-123	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A1U8A5K5	0.0	A0A1U8A5K5_NELNU; transcription factor DIVARICATA-like
STRING	XP_010256655.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58900.1	1e-101	Homeodomain-like transcriptional regulator

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]