PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_006968-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB | ||||||||
Protein Properties | Length: 186aa MW: 20567.8 Da PI: 4.828 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.1 | 1.7e-07 | 25 | 50 | 1 | 26 |
TSSS-HHHHHHHHHHHHHTTTT-HHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWkt 26 rg WT+eE+++lvd v +G W + NNU_006968-RA 25 RGDWTAEEEQKLVDHVSVHGEAKWGS 50 899*****************999976 PP | |||||||
2 | Myb_DNA-binding | 47.2 | 5e-15 | 56 | 99 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g+++++E++l++++ ++lG++ W++Ia +++ gRt++++k++w + NNU_006968-RA 56 GSFSEDEEDLIIRLYNLLGSR-WSLIAGRLP-GRTENEVKNHWIHH 99 78*******************.*********.***********876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.9E-8 | 18 | 52 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.63E-17 | 22 | 96 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.726 | 50 | 104 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-13 | 54 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-14 | 56 | 98 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-18 | 56 | 101 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.26E-10 | 57 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MVKKNKEPRN ESAFGSSSSK KNVKRGDWTA EEEQKLVDHV SVHGEAKWGS LPAKEGSFSE 60 DEEDLIIRLY NLLGSRWSLI AGRLPGRTEN EVKNHWIHHL NKRVLTITEL NQRAGGGNSN 120 SQTSNVPTSV AEASNLSPVV DACCPFDTII RSSEGSTQMN PPSETESELY LDMDELLDFS 180 ALSDLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-13 | 25 | 104 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010255775.1 | 1e-136 | PREDICTED: transcription factor TT2-like | ||||
Refseq | XP_010255776.1 | 1e-136 | PREDICTED: transcription factor TT2-like | ||||
Refseq | XP_010255778.1 | 1e-136 | PREDICTED: transcription factor TT2-like | ||||
TrEMBL | A0A1U8A3I4 | 1e-134 | A0A1U8A3I4_NELNU; transcription factor TT2-like | ||||
STRING | XP_010255775.1 | 1e-135 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 5e-29 | MYB family protein |