PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006703-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 664aa    MW: 74197.6 Da    PI: 4.8621
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006703-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.26.9e-14465511455
                    HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                    +h   ErrRR+++N++f  Lr+l+P+ +      K++Ka+iL  ++eY+k+L+
  NNU_006703-RA 465 NHVLSERRRREKMNEKFLVLRSLVPSiS------KVDKASILGDTIEYLKELE 511
                    58889*********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.7E-3820183IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.015461510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-19462526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-13464508No hitNo description
Gene3DG3DSA:4.10.280.101.0E-18465522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-11465511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-17467516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MCWTMATGLQ NQDGVPENHL RKQLAFAVRS IQWSYAIFWS ISTRQQGVLA WGDGYYNGDI  60
KTRKTVQPME LNTDQMGLQR SEQLRELYES LSAGDTNQQA RRPSAALSPE DLSDAEWLPG  120
RTLANGQPIW LCNAHHADSK VFSRSLLAKT VVCFPFLGGV VELGVTELVL EDPSIIQNVK  180
TSFLEFPEPM CSEQSTSSPQ NVDNEESLEL KHEVDNTVAL DKFNPTPECE MEPEIASQTF  240
PQCLSPCMAK EDIEQDGIEE LDANICDDIK SGSPDNGSNE CRANQQTEDS FMLDGMNGGT  300
SQVQSWQVMD DEFSNCVHGS MNSSDCISQI FVNPQKVVSS PKGERINNLQ LQDLQECNHT  360
KLGSLDLGND DLHYSRALSA IFKNSHPLIV GPGFHTGNHE SSFKSWKRRG FLDAQMVKIG  420
TPQKILKKVL FEVAQMHDGS LLKSRELNTG KVGLCKAEGD DVDLNHVLSE RRRREKMNEK  480
FLVLRSLVPS ISKVDKASIL GDTIEYLKEL ERRVEELESC RELSEFEAKA RRKHPDIAER  540
TSDNYGYNDI SNGKKPTINK RKAIDIDETE PELNQVLSKD GSAADVIVSV IDKEVLIEIR  600
CTWRDCLFFD IMDTVSNLHL DAHSVQSSTV DGILTVMLKT KFRGVAVASA GMVKQALQRV  660
ISKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-14459519262Transcription factor MYC2
5gnj_B4e-14459519262Transcription factor MYC2
5gnj_E4e-14459519262Transcription factor MYC2
5gnj_F4e-14459519262Transcription factor MYC2
5gnj_G4e-14459519262Transcription factor MYC2
5gnj_I4e-14459519262Transcription factor MYC2
5gnj_M4e-14459519262Transcription factor MYC2
5gnj_N4e-14459519262Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1469474ERRRRE
2470475RRRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255365.10.0PREDICTED: transcription factor GLABRA 3-like
RefseqXP_010255366.10.0PREDICTED: transcription factor GLABRA 3-like
TrEMBLA0A1U7ZMP00.0A0A1U7ZMP0_NELNU; transcription factor GLABRA 3-like
STRINGXP_010255365.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-162bHLH family protein