PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006581-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Dof
Protein Properties Length: 336aa    MW: 35851.7 Da    PI: 8.6997
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006581-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1244.8e-3965124362
         zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                    +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk+k++s
  NNU_006581-RA  65 HQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKNTS 124
                    6889****************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.5E-3266122IPR003851Zinc finger, Dof-type
ProDomPD0074786.0E-2468118IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4668122IPR003851Zinc finger, Dof-type
PROSITE patternPS01361070106IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MIQELLGGGA GLVGGERKIS IGGGILEGSP SSSPSPSPCS SSTTRTATTT TTATTTTTSS  60
ASSEHQNLRC PRCDSSNTKF CYYNNYNLTQ PRHFCKTCRR YWTKGGALRN VPIGGGCRKS  120
KNTSASTASA AKSSTGKVKT ASDIIKSNLG SGFDHEPPSN PILWASQQNS QLLALLRATQ  180
NPNPNPNPIC NSVTVKDEGG IIGSHMTCEP PVAGAVNART LSLDPLSQVP IGLCSSFWRN  240
NQHQLQHHHH HHQPHQQQHT LLLGEVQNAG FQELYQRLRQ SVNYYDTSAT VLSNVGSTSS  300
SSSSIMEPAP VAGGELGYWN PTFSWSDLPT TNGAFP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255110.10.0PREDICTED: dof zinc finger protein DOF5.6-like
RefseqXP_010255112.10.0PREDICTED: dof zinc finger protein DOF5.6-like
RefseqXP_010255113.10.0PREDICTED: dof zinc finger protein DOF5.6-like
TrEMBLA0A1U7ZSS20.0A0A1U7ZSS2_NELNU; dof zinc finger protein DOF5.6-like
STRINGXP_010255110.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.17e-31DOF zinc finger protein 1