PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_006546-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Protein Properties

Length: 279aa MW: 32474.2 Da PI: 10.2166

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_006546-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.6	5.3e-19	62	152	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffkv+ p +s rl++p +f+++++g+ + ++l+++ gr W+v++ + + ++++GWkeFv++n L++g f+vF+++ +s+f v + NNU_006546-RA 62 FFKVFFP--DQSSERLRVPPPFIKHFNGV--IPERVILRSRIGRFWSVEM--AQDEDNWFFQDGWKEFVQDNSLRSGYFLVFRYNYNSSF--DVLI 149 7888844..445567******888777..4557***********..88888899**********************998999..8888 PP E-S CS B3 97 frk 99 f++ NNU_006546-RA 150 FDS 152 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.12E-24	56	155	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	7.8E-26	57	154	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	14.325	60	153	IPR003340	B3 DNA binding domain
CDD	cd10017	3.81E-19	60	151	No hit	No description
Pfam	PF02362	3.9E-16	62	151	IPR003340	B3 DNA binding domain
SMART	SM01019	6.5E-15	62	153	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
NHSCLLCLHS LSFQSPKSLQ LSTGVLRSFS PVVLQRFSRE EIELEMVQAR RRAFNHDKSP 60 HFFKVFFPDQ SSERLRVPPP FIKHFNGVIP ERVILRSRIG RFWSVEMAQD EDNWFFQDGW 120 KEFVQDNSLR SGYFLVFRYN YNSSFDVLIF DSTSCEKEEF STCTNGGRRK AEEAKEDLNK 180 NTSSLKRVYF VRNPQEVRRK KCGCTQSKRA VAVEAEEERV PKAEKLVKPK EKIVTKANKL 240 DKPKNPQFTA CFSMLMAHLL AKRPFGRVSA LADFSIQRS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010255054.1	1e-174	PREDICTED: B3 domain-containing protein Os03g0622200-like isoform X2
TrEMBL	A0A1U7ZNZ0	1e-172	A0A1U7ZNZ0_NELNU; B3 domain-containing protein Os03g0622200-like isoform X2
STRING	XP_010255053.1	1e-157	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	1e-18	B3 family protein