PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_006184-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | YABBY | ||||||||
Protein Properties | Length: 172aa MW: 19446.2 Da PI: 7.3646 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 198.4 | 3e-61 | 7 | 157 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100 seqvCy+ CnfCn ilavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ ++ + +++ +++ +++s+ +++++ NNU_006184-RA 7 VPSEQVCYIPCNFCNIILAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSWQDL--------QAPN--FTSPEYRIELGSSSSKCNKIAMRP 92 679*******************************************999999988884........2223..333333333333333334444433 PP YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + v+rPPekrqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl NNU_006184-RA 93 -----PPAINEERIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPHIHFGL 157 .....22333333479****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.1E-70 | 8 | 157 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 8.64E-8 | 100 | 150 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.7E-4 | 105 | 151 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MSTCIDVPSE QVCYIPCNFC NIILAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAALQSLS 60 WQDLQAPNFT SPEYRIELGS SSSKCNKIAM RPPPAINEER IVNRPPEKRQ RVPSAYNQFI 120 KEEIQRIKAN NPEISHREAF STAAKNWAHF PHIHFGLMLE NSNQAKLDEV KE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010254434.1 | 1e-124 | PREDICTED: axial regulator YABBY 5-like | ||||
Swissprot | Q8GW46 | 3e-87 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A1U7ZMF7 | 1e-123 | A0A1U7ZMF7_NELNU; axial regulator YABBY 5-like | ||||
STRING | XP_010254434.1 | 1e-123 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 1e-89 | YABBY family protein |
Publications ? help Back to Top | |||
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