PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_005786-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB | ||||||||
Protein Properties | Length: 254aa MW: 28653 Da PI: 7.0238 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.3 | 1.5e-17 | 12 | 57 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed +l ++v+q G+++W++I++ ++ gR++k+c++rw + NNU_005786-RA 12 KGSWSPDEDAKLTRLVEQNGPRNWSLISSGIP-GRSGKSCRLRWCNQ 57 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 55.7 | 1.1e-17 | 66 | 108 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed ++++a++ +G++ W+tIar ++ gRt++ +k++w++ NNU_005786-RA 66 PFTPAEDAIIIKAHATHGNK-WATIARLLP-GRTDNAIKNHWNST 108 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.897 | 7 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.74E-30 | 10 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-15 | 11 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-17 | 12 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 13 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.39E-13 | 14 | 56 | No hit | No description |
PROSITE profile | PS51294 | 24.746 | 59 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-15 | 63 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.27E-11 | 66 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.6E-24 | 66 | 113 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.7E-15 | 66 | 108 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MVVGLNAGDR IKGSWSPDED AKLTRLVEQN GPRNWSLISS GIPGRSGKSC RLRWCNQLSP 60 LVQHRPFTPA EDAIIIKAHA THGNKWATIA RLLPGRTDNA IKNHWNSTLR RRLASESFSA 120 TSDPESESDS VRKRRCLRVS PENNSCNDDD DADEQRKAEP ATLLTLSPPG ESLGTAYGKV 180 EEEVVVKRDS EEREKERCTV EIKDMYLMNI VQRMIAEEVR NYIDKVRAKG ELALGFESGT 240 DQNTHNTWEL RNRD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 9e-37 | 11 | 113 | 3 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010253806.1 | 0.0 | PREDICTED: transcription factor MYB44-like | ||||
TrEMBL | A0A1U7ZXE9 | 0.0 | A0A1U7ZXE9_NELNU; transcription factor MYB44-like | ||||
STRING | XP_010253806.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 2e-55 | myb domain protein 77 |