PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005750-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C3H
Protein Properties Length: 703aa    MW: 75870.4 Da    PI: 6.4283
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005750-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-06273293526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C+ f++ G C+ Gd+C +aHg
  NNU_005750-RA 273 PCPEFRK-GNCRQGDSCEYAHG 293
                    8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.66E-1549153IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.69876154IPR020683Ankyrin repeat-containing domain
SMARTSM002480.2976106IPR002110Ankyrin repeat
PfamPF127961.6E-777143IPR020683Ankyrin repeat-containing domain
CDDcd002043.81E-1378154No hitNo description
Gene3DG3DSA:1.25.40.207.5E-1578153IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.915111146IPR002110Ankyrin repeat
SMARTSM002487.5E-4111143IPR002110Ankyrin repeat
SMARTSM003561.5E-5268294IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4272295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.896273295IPR000571Zinc finger, CCCH-type
SMARTSM0035631303326IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.944303327IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MCSEPKRKTS AVDLVMEGES QKQKESLNRN FSVLLELSAS DDLIGFRRAI EEEGFDIDEA  60
SSWYGRGIGS KKMGFVERTP LLVASMFGSK EVVAYILSTG KVDVNRACGS DGATALHCAA  120
VGGSSASLDI AKLLLDASAD IDSLDANGNR PVDLIPPALK WCNSRKKTLE KVLKGGSFTG  180
EGWNSDLTEE QPDQLLTPRA SKDLCEKKEY PVDLSLPDIK NGIYGTDEFR MYTFKVKPCS  240
RAYSHDWTEC PFVHPGENAR RRDPRKYHYS CVPCPEFRKG NCRQGDSCEY AHGVFECWLH  300
PAQYRTRLCK DETGCTRRVC FFAHKPEELR PLYASTGSAV PSPRSSSLSV SSLDVAPLSP  360
MALGSPSVLM LPTSTPPMSP SVSSSSPMGA AMWQNQSSLA PPTLQLPGSR LKAALSARDM  420
DLDMELLALD RHNQRQQLID EMSSLSTQSG WSLATAAALA ASSGGRAGEY SRLGGVKPTN  480
LDDVFGSLDT SVLSQLQGLS LNAAASQLQS PKGIHTRQTM NQQQLRSSYP TGLPSSPARS  540
SASFALDPSG AAAAAVMNAR SAACAKRSQS FIDRSPVNRQ TGFTCTAAAA TATAMSSTLC  600
DWGSPDGKLD WGIQGEELNK LRKSASFGFR NSNRNLAAAS VTPTVDEPDV SWVQSLVKDV  660
PTMGNGQLGQ EPQPQQYQLS SGGSEMLSPW VELVYMEQEQ MVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253756.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A1U7ZIN10.0A0A1U7ZIN1_NELNU; zinc finger CCCH domain-containing protein 66-like
STRINGXP_010253756.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-164C3H family protein