PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005749-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Trihelix
Protein Properties Length: 266aa    MW: 31616.8 Da    PI: 8.9077
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005749-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.35.8e-2522104186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W+ qe+++L+ +r e+++++ ++k++k lWe +s +++e+g++rs+ qCk+kw+nl +ryk ++++e +    +++++p++++++
  NNU_005749-RA  22 QWSLQETKELLLIRAELDRTFMETKRNKLLWEVISTRLKEKGYHRSADQCKCKWKNLVTRYKGCETIEPDS---VRQQFPFYNEIQ 104
                    7********************************************************************84...67789****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122035.93E-212186No hitNo description
PfamPF138372.7E-1922106No hitNo description
PROSITE profilePS500907.4682379IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MLCVTEGHHP SVNMETGDRF PQWSLQETKE LLLIRAELDR TFMETKRNKL LWEVISTRLK  60
EKGYHRSADQ CKCKWKNLVT RYKGCETIEP DSVRQQFPFY NEIQSIFNAR MQRMLWLEAE  120
GGGAGSSSLS KKKTRMSSDD DDENDEEKFS GKKKKKSRSN NSTAGIAGSS SSTNNNNLQE  180
ILEEFMRQQV QMEVQWREAM EAREQQRRLK EMEWRQTMEA LEKERLLMDR RWREIEEQRR  240
IREEARAEKR DALISALLNK IRREDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A5e-1223102786DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253755.10.0PREDICTED: trihelix transcription factor GT-3b-like
SwissprotQ9SDW03e-72TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A1U7ZPH00.0A0A1U7ZPH0_NELNU; trihelix transcription factor GT-3b-like
STRINGXP_010253755.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.11e-60Trihelix family protein