PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005714-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 334aa    MW: 36562.1 Da    PI: 5.933
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005714-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17239272134
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                    C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  NNU_005714-RA 239 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 272
                    99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.7E-772326IPR016679Transcription factor, GATA, plant
SMARTSM004014.2E-16233283IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.24237269IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.0E-15237270IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.31E-14238285No hitNo description
SuperFamilySSF577161.28E-14238296No hitNo description
PROSITE patternPS003440239264IPR000679Zinc finger, GATA-type
PfamPF003202.3E-15239272IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MIGSTNDLLD VCGDFFDQID DLLDFSTEDI EAGAGENYIT SWTTVPPDTM IGAPDSVFSG  60
YSDRSSSELA TELSVPYEEI AQLEWLSNFV EDSFSAGSSV TLDKDSFNDH KNNDSHRFQT  120
SSPVSVLESS SSCSGGGRTM PLSPETVVPG RARSKRPRPA TFNPRPVIPL ISPTSSIMEP  180
NQPLSASELE NYAESRPTKP TKKIRADEAM EQKKKKKKLS LIAGSAEQSV SQPIAIRKCM  240
HCEITKTPQW RAGPMGPKTL CNACGVRYKS GRLFPEYRPA ASPTFVSSLH SNSHKKVLEM  300
RSKVSHNAEM SAAATPITDA TELMTRSIHM LDYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154158KRPRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253699.10.0PREDICTED: GATA transcription factor 8-like
TrEMBLA0A1U7ZX460.0A0A1U7ZX46_NELNU; GATA transcription factor
STRINGXP_010253699.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-46GATA transcription factor 9