PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005593-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family AP2
Protein Properties Length: 518aa    MW: 55936.6 Da    PI: 6.3642
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005593-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.7e-17179228155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  NNU_005593-RA 179 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 228
                    78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.1E-9179228IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-16179237IPR016177DNA-binding domain
SMARTSM003802.0E-33180242IPR001471AP2/ERF domain
PROSITE profilePS5103217.82180236IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-17180236IPR001471AP2/ERF domain
CDDcd000185.26E-11180238No hitNo description
CDDcd000189.27E-13271331No hitNo description
SuperFamilySSF541711.44E-5271330IPR016177DNA-binding domain
SMARTSM003806.8E-11272335IPR001471AP2/ERF domain
PROSITE profilePS510329.032272329IPR001471AP2/ERF domain
PRINTSPR003675.8E-6273284IPR001471AP2/ERF domain
PRINTSPR003675.8E-6311331IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MLDLNVVSAD STCDGDRVMI GKLPVVSGGQ MDDSGSSNSS VVNADASSNG GDDDSCSIHD  60
RRPGGGDLFA FSFDILKKEA AADEDDDDEG ESENGNMTLP SGFVTRQLFP VTADGGRGVA  120
AGDAGSRLGP SSSSSSRPHW VDLSFCQPDT GGQPGMKVLH QQQQPQVKKS RRGPRSRSSQ  180
YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAHAAARAYD RAAIKFRGVD ADINFTLSDY  240
DEDLKQMRNL TKEEFVHILR RQSTGFSRGS SKYRGVTLHK CGRWEARMGQ FLGKKVPSNS  300
NLHFDFLEIR AYDKAAIKCN GREAVTNFEP STYEGEISSD ADNGGNGHIL DLNLGISPPS  360
FMDGPKGNES VGGFCLHCEP GDIPDTRRTR MENLPSATVG GQASHGPAMA SENPPILTGV  420
CPSYFPNHEE RMAEKRAEVG SLGLSNWAWQ MHGHSGGTAT PMPLFSTAAS SGFSSSTANA  480
SSAALPPPPP LNTSHQHYYP PNPTNPMANT SHFFYYRS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253486.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK031e-110RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A1U7ZK080.0A0A1U7ZK08_NELNU; ethylene-responsive transcription factor RAP2-7 isoform X1
STRINGXP_010253486.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.35e-97related to AP2.7