PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005224-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Trihelix
Protein Properties Length: 461aa    MW: 53073 Da    PI: 7.5262
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005224-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.75.6e-27153236186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    rW++ e+laL+++r+em+ ++r++k k+plWe vs+k++  g++r+pk+Ckek+en+ k+yk++k+++ +++ +  +t+++  +le
  NNU_005224-RA 153 RWPQAETLALLKIRSEMDAEFRNAKPKGPLWEIVSRKLEGLGYHRNPKKCKEKFENIYKYYKRTKQRQAGGHGD--KTYKFVGELE 236
                    8********************************************************************98443..3577776665 PP
2trihelix93.91.6e-29344427185
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                    rW+k ev+aLi++r +m++++r++  k plWee+s +m++ g++r++k+Ckekwen+nk++k+  e++k r +e+ +tcpyf++l
  NNU_005224-RA 344 RWPKAEVQALITLRISMDHKFRTTVPKVPLWEEISLAMSAMGYSRTAKKCKEKWENINKYFKRSIENRKTR-PENAKTCPYFHEL 427
                    8******************************************************************9997.99999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0068150212IPR001005SANT/Myb domain
PROSITE profilePS500906.597152210IPR017877Myb-like domain
CDDcd122031.85E-23152217No hitNo description
PfamPF138371.0E-18152237No hitNo description
SMARTSM007170.005341403IPR001005SANT/Myb domain
SuperFamilySSF466898.5E-5342413IPR009057Homeodomain-like
CDDcd122033.29E-24343407No hitNo description
PfamPF138371.2E-18343427No hitNo description
PROSITE profilePS500906.992344401IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MTHIDFPDNI SPFPDAGDLL YGNRTAISSP LEIEFRSLLP LQKLRPIRGN RGDSAEYSDC  60
PANFHEVEFR EKAESANLLN RHQSIVALPP EIEFEPSLPI QTLPPLRTGG DNTECCSSPA  120
SAGEVIEFPE KEGESGSRWD TLALLKVVDT GNRWPQAETL ALLKIRSEMD AEFRNAKPKG  180
PLWEIVSRKL EGLGYHRNPK KCKEKFENIY KYYKRTKQRQ AGGHGDKTYK FVGELEALFN  240
QNNKNPSSET LSLDVTRIQS PEPRERDRMI REEEWKKQEM ERIKKDKEMR AQETSRSLAL  300
LSFIQKVLGQ QFYVPQSPEL SYLGEEQDEK HDKTDYSFDP SNRRWPKAEV QALITLRISM  360
DHKFRTTVPK VPLWEEISLA MSAMGYSRTA KKCKEKWENI NKYFKRSIEN RKTRPENAKT  420
CPYFHELAIL YKNGLINPGN ALSNTTNANE DKSITEEIPE S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252772.10.0PREDICTED: trihelix transcription factor GTL1-like
TrEMBLA0A1U7ZGA30.0A0A1U7ZGA3_NELNU; trihelix transcription factor GTL1-like
STRINGXP_010252772.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-36Trihelix family protein