PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_005007-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | WRKY | ||||||||
Protein Properties | Length: 613aa MW: 66174.2 Da PI: 6.7892 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.3 | 1e-30 | 334 | 392 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ NNU_005007-RA 334 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRSILITTYEGNHNHP 392 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-33 | 318 | 394 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.45E-28 | 326 | 394 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.792 | 328 | 394 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-37 | 333 | 393 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.8E-27 | 335 | 392 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 613 aa Download sequence Send to blast |
MDKGGGLTID SSEIGFFVTK PTAIKSSFLT SNHPKWKHDL MDFPVNLNCR DETASPVPSD 60 EKRIDEMDFF SDKNRLKDFD AKASTIDIKK EDSHGGVAPR LNLDVNTGLH LLTANNGSDQ 120 STVDDGVSPN SGDKKAKSEL AALQSELDRM NEENQRLKAM LSQVSNNYNA LQMHLVTLMQ 180 QQNRKAENTQ EHEISDGKLE GKKQDAGGGP MVPRQFMDLG PAATADTDEP SQSSSEGRSR 240 DRSGSPHNNA VEVVSKEYRQ QKNNSSNEIV PFDQDKGDFG EGRGIGREES PNQGWAANKI 300 PKLNPSKNAD QSTEATMRKA RVSVRARSEA PMITDGCQWR KYGQKMAKGN PCPRAYYRCT 360 MAAGCPVRKQ VQRCAEDRSI LITTYEGNHN HPLPPAAMAM ASTTSAAACM LLSGSMSSAD 420 GLINSNFLTR TLLPCSSSMA TISASAPFPT VTLDLTHNPN PLQFQRPPTQ FHVPFPNQPQ 480 TFPSQPAPPL AQVFGQTLYN QSKFSGLQIS QDVEPAQFVN QPPPPQLHQA QQTSFADTVS 540 AATAAITADP NFTAALAAAI TSIIGGGVRP TNNSNGNDNS NNNNAANNSS GNTTTSNNNS 600 NNNKLSSSNF AGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-22 | 320 | 396 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010252466.1 | 0.0 | PREDICTED: probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-140 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A1U7ZFH6 | 0.0 | A0A1U7ZFH6_NELNU; probable WRKY transcription factor 31 | ||||
STRING | XP_010252466.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22070.1 | 1e-120 | WRKY DNA-binding protein 31 |