PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_004634-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB
Protein Properties Length: 654aa    MW: 74631 Da    PI: 8.5627
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_004634-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.9e-07465506240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W  eE ell ++ +++++g   +W+ I++++g+gR+ +++
    NNU_004634-RA 465 KPWGREEIELLRKGMQKYPKGtsrRWEVISEYIGTGRSVEEI 506
                      68***********************************99876 PP
2Myb_DNA-binding27.95.4e-09597641345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                       W++  +  l++a k ++++   +W+++a+ ++ g+t +qck ++ 
    NNU_004634-RA 597 VWSAVQERALIQALKTFPKDtaqRWERVAAAVP-GKTVNQCKKKFA 641
                      6********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465656.02E-2093175IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1102.3E-2194196IPR001623DnaJ domain
SMARTSM002711.4E-1496171IPR001623DnaJ domain
CDDcd062571.89E-1397168IPR001623DnaJ domain
PfamPF002265.4E-1897176IPR001623DnaJ domain
PROSITE profilePS5007618.48697179IPR001623DnaJ domain
PRINTSPR006252.9E-8102120IPR001623DnaJ domain
PRINTSPR006252.9E-8120135IPR001623DnaJ domain
PRINTSPR006252.9E-8151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.609.9E-5459506IPR009057Homeodomain-like
SuperFamilySSF466892.99E-7460507IPR009057Homeodomain-like
PROSITE profilePS512936.232462517IPR017884SANT domain
SMARTSM007178.8E-6463516IPR001005SANT/Myb domain
PfamPF002497.2E-6465506IPR001005SANT/Myb domain
CDDcd001673.30E-4466506No hitNo description
Gene3DG3DSA:1.10.10.604.1E-6591640IPR009057Homeodomain-like
PROSITE profilePS5129311.31593648IPR017884SANT domain
SMARTSM007172.4E-9594646IPR001005SANT/Myb domain
SuperFamilySSF466892.17E-9596651IPR009057Homeodomain-like
PfamPF002491.0E-7597640IPR001005SANT/Myb domain
CDDcd001677.57E-7598644No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MAIQPRLPLI TYSSEIVDGE PIYISSNCLP VKVAHFEPAG LSFHLAALKL LGLGEEEDAN  60
VEDQNVPSDK GQTYMQYSDS YSSKGKKKSG AGGKQQDHYA LLGLGHLRFL ATEEQIRKSY  120
RETALKYHPD KQAALLLAEE TEAARQAKKD EIENHFKAIQ EAYEVLIDPV KRRIYDSTDE  180
FDDEIPTDCV PQDFFKVFGP AFMRNGRWSV NQPVPSLGDE NTAMEEVDSF YNFWYSFKSW  240
REFPHADEFD LEQAESRDHK RWMERQNSKL REKARKEEYA RVRTLVDNAY KRDPRILKRK  300
EEEKAEKQRK KEAKYLARRL QEEEAAKIAE EEKRRKEEEE RLAAEAALNQ KKVKEKEKKL  360
LRKERTRLRT LSAPIVSKRL LDLTEDDVGS LCMSFETEQL RGLCDKLEHK EGIEQARILK  420
DALRLSSNLE EAKQTERNTQ QNGSLVVNGN GDSMQSLNNY EKKEKPWGRE EIELLRKGMQ  480
KYPKGTSRRW EVISEYIGTG RSVEEILKAT KTVLLQKPDS AKAFDSFLEK RKPAQAIASP  540
LTTRQESEGL TTAADIPGSN ASKVVSANQS SSSSSGYRNT EGVVTVNGVS SSAEQDVWSA  600
VQERALIQAL KTFPKDTAQR WERVAAAVPG KTVNQCKKKF ALLKENFRSK KNAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A5e-2119329620123Zuotin
5dje_B5e-2119329620123Zuotin
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019052624.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLA0A1U8Q1C80.0A0A1U8Q1C8_NELNU; dnaJ homolog subfamily C member 2-like
STRINGXP_010251750.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain