PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_004596-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

G2-like

Protein Properties

Length: 296aa MW: 31966.9 Da PI: 7.8939

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_004596-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.6	2.9e-33	47	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl NNU_004596-RA 47 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 101 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.33	44	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.6E-32	46	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.94E-17	46	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.9E-26	47	102	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-7	49	100	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-24	133	179	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MYHAKKFSTM TLVPHKPQPQ GADQLPNVGV LGGSTINNSA TSGGTGKQRL RWTSDLHDRF 60 VDAITQLGGP DRATPKGVLR VMGVPGLTIY HVKSHLQKYR LAKYLPESPA DGSKDEKKDS 120 GDSLSSMDSA PGVQINEALR MQMEVQKRLH EQLEVQRQLQ LRIEAQGRYL QKIIEEQQKL 180 GGALKASEPL PLADEKQKQS TSVTAAAVEG PMSPLKKQRV DDGSSDPASS VLVPPPPSTE 240 KKSDFIGQWD GDLYGGNGVG FEFDVVNEFK EKEDGGAEQR ATSKVGTGYG TGGSIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-24	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-24	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-24	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-24	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-24	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-24	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-24	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-24	46	104	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010251692.1	0.0	PREDICTED: myb family transcription factor PHL7-like
Swissprot	Q9SJW0	2e-74	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A1U7ZTK7	0.0	A0A1U7ZTK7_NELNU; myb family transcription factor PHL7-like
STRING	XP_010251692.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-52	G2-like family protein