PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_004392-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB
Protein Properties Length: 225aa    MW: 25450.7 Da    PI: 6.2552
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_004392-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.95.4e-19552148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT eEd++l+d++k +G+g+W+++a++ g++R++k+c++rw +yl
    NNU_004392-RA  5 KGFWTVEEDKILIDYIKVHGKGRWNRVAKMTGLKRCGKSCRLRWMNYL 52
                     688*******************************************97 PP
2Myb_DNA-binding62.87e-2058103148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T+eEd+l+++++k+lG++ W++Ia +++ gRt++q+k++w+++l
    NNU_004392-RA  58 RGEFTEEEDDLIIRLHKLLGNR-WSLIAGRVP-GRTDNQVKNHWNTHL 103
                      899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.438152IPR017930Myb domain
SuperFamilySSF466895.39E-32399IPR009057Homeodomain-like
SMARTSM007172.0E-16454IPR001005SANT/Myb domain
PfamPF002497.6E-17652IPR001005SANT/Myb domain
CDDcd001679.95E-13852No hitNo description
Gene3DG3DSA:1.10.10.601.2E-24859IPR009057Homeodomain-like
PROSITE profilePS5129430.17753107IPR017930Myb domain
SMARTSM007176.9E-1957105IPR001005SANT/Myb domain
PfamPF002492.4E-1858103IPR001005SANT/Myb domain
CDDcd001671.31E-1360103No hitNo description
Gene3DG3DSA:1.10.10.606.7E-2860107IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010053Biological Processroot epidermal cell differentiation
GO:0010091Biological Processtrichome branching
GO:0048629Biological Processtrichome patterning
GO:0090377Biological Processseed trichome initiation
GO:0090378Biological Processseed trichome elongation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEEKKGFWTV EEDKILIDYI KVHGKGRWNR VAKMTGLKRC GKSCRLRWMN YLRPDVKRGE  60
FTEEEDDLII RLHKLLGNRW SLIAGRVPGR TDNQVKNHWN THLSKKLGIR KEKNKVVDVS  120
SSLTLFEKGN VEAGESLHLS THTNLSNLPI CDEDNSKAVG SAVNNIEASA SGNSLEALDL  180
ETQDPAMSEC YENSFWSLSD DLDINTPSLI EIPDGNSLDV VWRGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-30510727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Regulates the epidermal cell fate specification. Mediates the formation of columellae and accumulation of mucilages on seed coats. Controls the elongation of epidermal cells positively in roots but negatively in stems, leading to the promotion of primary roots elongation and repression of leaves and stems elongation, respectively. Ovoids ectopic root-hair formation, probably by inducing GL2 in roots. Controls trichome initiation and branching. {ECO:0000269|PubMed:11437443, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15668208, ECO:0000269|PubMed:15728674}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00538DAPTransfer from AT5G40330Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010251260.11e-165PREDICTED: transcription factor WER-like
SwissprotQ962768e-68MYB23_ARATH; Transcription factor MYB23
TrEMBLA0A1U7ZIC31e-164A0A1U7ZIC3_NELNU; transcription factor WER-like
STRINGXP_010251260.11e-164(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40330.13e-70myb domain protein 23
Publications ? help Back to Top
  1. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  2. Yu D, et al.
    RPN1a, a subunit of the 26S proteasome, controls trichome development in Arabidopsis.
    Plant Physiol. Biochem., 2015. 88: p. 82-8
    [PMID:25676129]
  3. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  4. Kohanová J, et al.
    Root hair abundance impacts cadmium accumulation in Arabidopsis thaliana shoots.
    Ann. Bot., 2018. 122(5): p. 903-914
    [PMID:29394308]