PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_004037-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | TCP | ||||||||
Protein Properties | Length: 244aa MW: 25468.6 Da PI: 9.6785 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 128.5 | 6.6e-40 | 49 | 135 | 2 | 88 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ a+ s+s++ ss + NNU_004037-RA 49 APKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGGSVSQQGSSVS 135 789******************************************************************888444444444433333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.3E-32 | 54 | 141 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.07 | 55 | 109 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MDPKGSKQPQ EVPKFLSLPQ PDMGDNKPAE IKDFQIVIAE KDEGKKQLAP KRSSNKDRHT 60 KVDGRGRRIR MPALCAARIF QLTRELGHKS DGETIQWLLQ QAEPSIIAAT GTGTIPASAL 120 AAAGGSVSQQ GSSVSAGLHS KIDELGPGVG SGSRTNWSVM GSNLGRSHVA TGLWPSVGGF 180 GPGFVPASAP STSNLGTESS NYLTRIGFHG FELPGSNLGP VAFSSIMGGN NQHLPGCADG 240 TMQN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010250638.1 | 1e-156 | PREDICTED: transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 1e-69 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A1U7ZPP3 | 1e-155 | A0A1U7ZPP3_NELNU; transcription factor TCP20 | ||||
STRING | XP_010250638.1 | 1e-156 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 4e-59 | TCP family protein |