PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_003979-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 366aa MW: 40390.2 Da PI: 7.4225

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_003979-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.7	2.4e-09	178	225	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+ l+P + +k Ka +L + ++Y++sLq NNU_003979-RA 178 SHSLAERVRREKISERMKMLQGLVPGC----DKITGKAHMLDEIINYVRSLQ 225 8***********************9....899***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.00E-10	172	229	No hit	No description
SuperFamily	SSF47459	3.93E-16	172	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.389	174	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-16	174	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.3E-7	178	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.2E-9	180	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MAAFSYQQPT FLLDSAMLPN SPVKMPGLFE FGLGLGLGDI NATCFPYFPP QPLPESSIDN 60 LDTSKNVILS DNEPSMTQKQ RSYSSSLVVG LESGDQVTQD ETQKMDKRKK KKNGDGSCSN 120 FAESSKDVRE GKSKRQRKCS SASKDAEEDK RRADKKVGEE APTGYIHVRA RRGQATDSHS 180 LAERVRREKI SERMKMLQGL VPGCDKITGK AHMLDEIINY VRSLQSQVEF LSMKLASASP 240 IFYDFGADLD ASLPKPPVNL APPPTTQSTQ ASCASEPTAF MDSTTSFSTR NNYPILDSSI 300 AAGFLEQGQR PNADAFPQKN GNLLWDVENQ IRSFNHQSNF NTFCSFQATA VTLEERHTTS 360 KLSAAW

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MAAFSYQQPT FLLDSAMLPN SPVKMPGLFE FGLGLGLGDI NATCFPYFPP QPLPESSIDN  60
LDTSKNVILS DNEPSMTQKQ RSYSSSLVVG LESGDQVTQD ETQKMDKRKK KKNGDGSCSN  120
FAESSKDVRE GKSKRQRKCS SASKDAEEDK RRADKKVGEE APTGYIHVRA RRGQATDSHS  180
LAERVRREKI SERMKMLQGL VPGCDKITGK AHMLDEIINY VRSLQSQVEF LSMKLASASP  240
IFYDFGADLD ASLPKPPVNL APPPTTQSTQ ASCASEPTAF MDSTTSFSTR NNYPILDSSI  300
AAGFLEQGQR PNADAFPQKN GNLLWDVENQ IRSFNHQSNF NTFCSFQATA VTLEERHTTS  360
KLSAAW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	136	KSKRQR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010250560.1	0.0	PREDICTED: transcription factor bHLH137-like isoform X1
TrEMBL	A0A1U7ZAM2	0.0	A0A1U7ZAM2_NELNU; transcription factor bHLH137-like isoform X1
STRING	XP_010250560.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	3e-55	bHLH family protein