PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | NNU_003736-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 217aa MW: 24167.8 Da PI: 8.5905 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 97.6 | 2.8e-30 | 9 | 123 | 5 | 134 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnv..ekeesastsvss 98 +seqvCy+ CnfCn ilavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ ++ +++ +++ +++ ++ + ++ NNU_003736-RA 9 LQSEQVCYIPCNFCNIILAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSWQDL----------QTPSFTSPDYRIDLgsSSKCNKVAMRPP 94 579********************************************99999998884..........2222333333222200222222222222 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfik 134 + n+++ + v+rP ekrqrvPsayn+fi NNU_003736-RA 95 --PPANSEQRI-----VNRPAEKRQRVPSAYNQFIN 123 ..234444444.....59****************96 PP | |||||||
2 | YABBY | 77.4 | 4.4e-24 | 149 | 189 | 130 | 170 |
YABBY 130 nrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 n +eeiqrika+nP+ishreafs+aaknWahfP+ihfgl NNU_003736-RA 149 NMVHREEIQRIKANNPEISHREAFSTAAKNWAHFPHIHFGL 189 56679**********************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.5E-38 | 10 | 123 | IPR006780 | YABBY protein |
Pfam | PF04690 | 8.0E-22 | 150 | 189 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 217 aa Download sequence Send to blast |
MSMSTCINLQ SEQVCYIPCN FCNIILAVSV PCSSLFDIVT VRCGHCTNLW SVNMAAALQS 60 LSWQDLQTPS FTSPDYRIDL GSSSKCNKVA MRPPPPANSE QRIVNRPAEK RQRVPSAYNQ 120 FINAIASSSI FPTPLVVIAP AVTQLFLSNM VHREEIQRIK ANNPEISHRE AFSTAAKNWA 180 HFPHIHFGLM LENKNQAKLD EGSDRHLMTK AAAILNK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010250140.1 | 1e-132 | PREDICTED: axial regulator YABBY 5-like isoform X3 | ||||
Swissprot | Q8GW46 | 4e-77 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A1U7ZNG6 | 1e-131 | A0A1U7ZNG6_NELNU; axial regulator YABBY 5-like isoform X3 | ||||
STRING | XP_010250138.1 | 1e-129 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26580.2 | 1e-79 | YABBY family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|