PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_003474-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB

Protein Properties

Length: 1057aa MW: 115952 Da PI: 5.0019

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_003474-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.3	1.3e-16	94	141	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WTteEd ll +av+++ g++Wk+Ia++ k Rt+ qc +rwqk+l NNU_003474-RA 94 KGQWTTEEDALLCKAVQKYKGRNWKKIAAECFKDRTDVQCLHRWQKVL 141 799***********************99999**********986 PP
2	Myb_DNA-binding	61.9	1.3e-19	147	193	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+++++v+++G + W+tIa+ ++ gR +kqc++rw+++l NNU_003474-RA 147 KGPWSKEEDEIIIELVNKYGAKKWSTIAQALP-GRIGKQCRERWHNHL 193 79****************************.***********97 PP
3	Myb_DNA-binding	49.1	1.3e-15	199	241	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gRt++ +k++w+ NNU_003474-RA 199 KEAWTQEEELALIQAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 241 579*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.578	89	141	IPR017930	Myb domain
SuperFamily	SSF46689	5.32E-15	90	147	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-12	93	143	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-13	94	141	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.4E-21	96	154	IPR009057	Homeodomain-like
CDD	cd00167	5.58E-12	97	141	No hit	No description
PROSITE profile	PS51294	32.289	142	197	IPR017930	Myb domain
SuperFamily	SSF46689	5.75E-32	144	240	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-18	146	195	IPR001005	SANT/Myb domain
Pfam	PF00249	6.0E-18	147	193	IPR001005	SANT/Myb domain
CDD	cd00167	2.69E-16	149	193	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.0E-27	155	200	IPR009057	Homeodomain-like
SMART	SM00717	4.5E-15	198	246	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.827	198	248	IPR017930	Myb domain
Pfam	PF00249	1.2E-13	199	242	IPR001005	SANT/Myb domain
CDD	cd00167	1.12E-11	201	241	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.6E-21	201	248	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1057 aa Download sequence Send to blast
MCTESIVSLT SSIQYLHRFS GFCCSKLNTS CPSKRKIWIL FREAYDGTMA TDKTKGARRV 60 EAPVGAPPDG SSESFQKMRP LNGRTSGPTR RSTKGQWTTE EDALLCKAVQ KYKGRNWKKI 120 AAECFKDRTD VQCLHRWQKV LNPELVKGPW SKEEDEIIIE LVNKYGAKKW STIAQALPGR 180 IGKQCRERWH NHLNPAINKE AWTQEEELAL IQAHQIYGNK WAELTKFLPG RTDNAIKNHW 240 NSSVKKKLDS YLASGLLAQF QGLPPVRNPT QCMPSSSMGV QQSNGDKNGP IDRAEAGQIS 300 ECSQGSIAVG CSQSECDMVS NTVSVNAQEN LKPLEESSQR EGQSSNSSCS EPYYVSLEEV 360 QEIHDGVNIS ASSSERNGLQ EVGNSDNKNC KFGSHELSAS FIEVMQESSG FFETSGHCIN 420 GMDENNSMGF NAPSSMENMI VGSNKQENMS IEEGDFGGVS FSGAGMDACF SMENPTTCPN 480 IIDLDGCTDS FLCQSNIQNS ETAGNLVSHS YYPLGSAPLL GGTCCETLLS GPPLLCSAPE 540 LVFGSECNEA SDTPSANQDS ELVTNSCSGF IYPDGSGTSL CNGDTNKVCQ PVEAEHEKET 600 SESLFDSFWD SPSRDDSPDG VLKSAAKSFL CTPSILKKRQ RELLSPLHER KSDKKLERDI 660 NQGLCCTSTL SREFSCLDVM FDDSGSRRAS LSSIEGSLFS PSYCKKKNSG TSDEDKENLE 720 NAFEVRKDGP AFPGRVSEVA SDNSNPKDKI KQRSSNEMTK VNEDIAVQTA SGVLVEHNTN 780 DTVFFSPDRD GHSRKRGLNS VKTPKSQPFR SCDGTFNQSG RLESSSRSRC ISVILSPTVC 840 EKRHEKNLLP DASLQSVPSL NTMELASENA GNGADIESFI MFGDTPATKR GLDSPSAWKS 900 PWFMNSFLPG PRVDTDITIE DIGFLMSPGD RSYDAIGLMR QLSEHTAAAL AEAQEVLSGE 960 NSEIPSKERH SSNQKLAEEN NQFTDYELEN LISLNLAELT LFFQYRFLFY ILMTERRVLD 1020 FSGCGTPGKG AENGKPMAFP SGVSFSSPSS YLMKGCR

Sequence ? help Back to Top

Protein Sequence Length: 1057 aa Download sequence Send to blast

MCTESIVSLT SSIQYLHRFS GFCCSKLNTS CPSKRKIWIL FREAYDGTMA TDKTKGARRV  60
EAPVGAPPDG SSESFQKMRP LNGRTSGPTR RSTKGQWTTE EDALLCKAVQ KYKGRNWKKI  120
AAECFKDRTD VQCLHRWQKV LNPELVKGPW SKEEDEIIIE LVNKYGAKKW STIAQALPGR  180
IGKQCRERWH NHLNPAINKE AWTQEEELAL IQAHQIYGNK WAELTKFLPG RTDNAIKNHW  240
NSSVKKKLDS YLASGLLAQF QGLPPVRNPT QCMPSSSMGV QQSNGDKNGP IDRAEAGQIS  300
ECSQGSIAVG CSQSECDMVS NTVSVNAQEN LKPLEESSQR EGQSSNSSCS EPYYVSLEEV  360
QEIHDGVNIS ASSSERNGLQ EVGNSDNKNC KFGSHELSAS FIEVMQESSG FFETSGHCIN  420
GMDENNSMGF NAPSSMENMI VGSNKQENMS IEEGDFGGVS FSGAGMDACF SMENPTTCPN  480
IIDLDGCTDS FLCQSNIQNS ETAGNLVSHS YYPLGSAPLL GGTCCETLLS GPPLLCSAPE  540
LVFGSECNEA SDTPSANQDS ELVTNSCSGF IYPDGSGTSL CNGDTNKVCQ PVEAEHEKET  600
SESLFDSFWD SPSRDDSPDG VLKSAAKSFL CTPSILKKRQ RELLSPLHER KSDKKLERDI  660
NQGLCCTSTL SREFSCLDVM FDDSGSRRAS LSSIEGSLFS PSYCKKKNSG TSDEDKENLE  720
NAFEVRKDGP AFPGRVSEVA SDNSNPKDKI KQRSSNEMTK VNEDIAVQTA SGVLVEHNTN  780
DTVFFSPDRD GHSRKRGLNS VKTPKSQPFR SCDGTFNQSG RLESSSRSRC ISVILSPTVC  840
EKRHEKNLLP DASLQSVPSL NTMELASENA GNGADIESFI MFGDTPATKR GLDSPSAWKS  900
PWFMNSFLPG PRVDTDITIE DIGFLMSPGD RSYDAIGLMR QLSEHTAAAL AEAQEVLSGE  960
NSEIPSKERH SSNQKLAEEN NQFTDYELEN LISLNLAELT LFFQYRFLFY ILMTERRVLD  1020
FSGCGTPGKG AENGKPMAFP SGVSFSSPSS YLMKGCR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	5e-66	94	248	6	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	5e-66	94	248	6	159	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.2	1e-108	myb domain protein 3r-4