PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_003395-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 335aa    MW: 37259.2 Da    PI: 6.4356
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_003395-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.3e-18231265135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  NNU_003395-RA 231 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 265
                    99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.2E-8418318IPR016679Transcription factor, GATA, plant
SMARTSM004014.7E-18225275IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.558225261IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.38E-15226289No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14226262IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.75E-14230277No hitNo description
PfamPF003201.2E-15231265IPR000679Zinc finger, GATA-type
PROSITE patternPS003440231256IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEAPEFFHGG YYRPGNPQFT PEKRHSDPKP GDHFIIDDLL DFSNEDAVIT DGTFDITGNS  60
TDSSTVTVLD SCNSSFSGSD PHFSGDFGCR SFPDAQFSGD LCVPYDDLAE LEWLSNFVEE  120
SFSSEDLQKL QLISGMKART DEVSETREFQ PENNRNNPMF RPEISVPGKA RSKRSRAAPC  180
DWSSRLLVLS PTTSSSESDV ASNSGKKTTK GAPKKRESSD NASGNGEGRK CLHCATDKTP  240
QWRTGPMGPK TLCNACGVRY KSGRLVPEYR PAASPTFVLT KHSNSHRKVM ELRRQKELQR  300
AQQQQFLHAN PVFDVSSGED YLIHHHAGPD FRQLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249552.10.0PREDICTED: GATA transcription factor 12
SwissprotP697811e-99GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A1U7ZM210.0A0A1U7ZM21_NELNU; GATA transcription factor
STRINGXP_010249552.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.14e-93GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]