PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002716-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB
Protein Properties Length: 372aa    MW: 41553.1 Da    PI: 6.9017
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002716-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.12e-131477148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT...............TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg...............kgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++++G+g +W + ++++g               ++R++k+c++rw++yl
    NNU_002716-RA 14 KGPWSPEEDAKLKAYIEEHGTGgNWIALPQKIGrvayltlhvgfvsvgLKRCGKSCRLRWLNYL 77
                     79************************************************************97 PP
2Myb_DNA-binding353.4e-1184130246
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  +    G++   +W+ Ia+ ++ gRt++++k++w++
    NNU_002716-RA  84 GGFSEEEDNIICSLYISIGSRqvfSWSIIAAQLP-GRTDNDIKNYWNT 130
                      569*******************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5009010.406977IPR017877Myb-like domain
SuperFamilySSF466897.81E-2211128IPR009057Homeodomain-like
SMARTSM007171.1E-101379IPR001005SANT/Myb domain
PfamPF002492.4E-131477IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-231584IPR009057Homeodomain-like
CDDcd001672.16E-81677No hitNo description
PROSITE profilePS5129420.27978136IPR017930Myb domain
SMARTSM007178.2E-982134IPR001005SANT/Myb domain
PfamPF002495.3E-1084130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-2185136IPR009057Homeodomain-like
CDDcd001671.12E-786132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE EHGTGGNWIA LPQKIGRVAY LTLHVGFVSV  60
GLKRCGKSCR LRWLNYLRPN IKHGGFSEEE DNIICSLYIS IGSRQVFSWS IIAAQLPGRT  120
DNDIKNYWNT RLKKKLLGKQ RKELNARRLH GLKQEMKKGS GNFMVSESRS SNQNPCWSEM  180
PMPAVPMPYP SNQDPHLSDH ASIRKLLIKL GAGGRFSDGH QQPINDDEGM NLQCPLDTSS  240
TQQQLYENSI DLLPSPCPMN SVITSNTCQL TEAQYDMDVA NMHLLQGGLN SFPVELNETI  300
YNNNFPQRLE GLEFLYGGGM VNDSTGTSSA ESSSWCDISS LVYPPLVANC EGRDPAMLQE  360
CPFEESRYMV PQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-20141367108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2295858e-41KP229585.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB29) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010248310.10.0PREDICTED: transcription factor RAX3
TrEMBLA0A1U7Z7C60.0A0A1U7Z7C6_NELNU; transcription factor RAX3
STRINGXP_010248310.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.17e-71myb domain protein 84