PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | NNU_002667-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 182aa MW: 20146.8 Da PI: 7.8694 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 225.3 | 1.6e-69 | 2 | 155 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 +++ +se+vCyv+CnfCntilavsvPstsl+++vtvrCGhC++llsvn+ q l+ ++ +++++++ + + s+s+ ++ NNU_002667-RA 2 SLDVASEHVCYVNCNFCNTILAVSVPSTSLYNIVTVRCGHCANLLSVNMGALIQSLPLQD-------------IQNHNSSTGDLSKDSGSSSKCNK 84 67789**********************************************999999877.............46677777888888888888888 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +l++ ++e pr+ p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl NNU_002667-RA 85 VPMLDTA-ENEQPRMLP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 155 8776655.567799999.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.0E-73 | 6 | 155 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.57E-8 | 99 | 148 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.5E-5 | 103 | 149 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 182 aa Download sequence Send to blast |
MSLDVASEHV CYVNCNFCNT ILAVSVPSTS LYNIVTVRCG HCANLLSVNM GALIQSLPLQ 60 DIQNHNSSTG DLSKDSGSSS KCNKVPMLDT AENEQPRMLP IRPPEKRQRV PSAYNRFIKE 120 EIQRIKASNP DISHREAFST AAKNWAHFPH IHFGLTLDGN KHVQQLDEAI AGEGPKKTQG 180 FY |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CU227644 | 2e-40 | CU227644.1 Populus EST from severe drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010247861.1 | 1e-136 | PREDICTED: putative axial regulator YABBY 2 isoform X2 | ||||
Swissprot | Q9XFB0 | 5e-79 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A1U7ZI03 | 1e-135 | A0A1U7ZI03_NELNU; putative axial regulator YABBY 2 isoform X2 | ||||
STRING | XP_010247851.1 | 1e-134 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08465.1 | 5e-77 | YABBY family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|