PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_001956-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB | ||||||||
Protein Properties | Length: 221aa MW: 24729.4 Da PI: 9.1658 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 64.2 | 2.5e-20 | 40 | 85 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+teEd++l ++v+++G ++W++I+r+++ gR++k+c++rw + NNU_001956-RA 40 KGPWSTEEDKILTRLVNRHGARNWSLISRYIP-GRSGKSCRLRWCNQ 85 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 53.7 | 4.8e-17 | 94 | 136 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a++ +G++ W+tIar ++ gRt++ +k++w++ NNU_001956-RA 94 PFSPAEDETILAAHASYGNR-WATIARLLP-GRTDNAVKNHWNST 136 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.019 | 35 | 90 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.8E-31 | 38 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-17 | 39 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-19 | 40 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-25 | 41 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.05E-15 | 42 | 84 | No hit | No description |
SMART | SM00717 | 5.7E-15 | 91 | 139 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.094 | 92 | 141 | IPR017930 | Myb domain |
CDD | cd00167 | 1.25E-11 | 94 | 137 | No hit | No description |
Pfam | PF00249 | 4.1E-14 | 94 | 136 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-23 | 94 | 140 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MEAIYTYSSP STSSSDSSES ESSHPGNKQM GSTKKSERIK GPWSTEEDKI LTRLVNRHGA 60 RNWSLISRYI PGRSGKSCRL RWCNQLSPNV EHRPFSPAED ETILAAHASY GNRWATIARL 120 LPGRTDNAVK NHWNSTLKRR QREQPVEDNN GGRSLESGSS SETKPDPPTT LTLAPPGVSC 180 SLPERRMENF SSEFWDMMRE VIAKEVRNYV SSSLAETAGF P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-38 | 39 | 140 | 6 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010268609.1 | 1e-163 | PREDICTED: transcriptional activator Myb-like | ||||
Swissprot | O23160 | 3e-57 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A1U8AME7 | 1e-161 | A0A1U8AME7_NELNU; transcriptional activator Myb-like | ||||
STRING | XP_010268609.1 | 1e-162 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 7e-58 | myb domain protein 73 |
Publications ? help Back to Top | |||
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