PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_001408-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | GRF | ||||||||
Protein Properties | Length: 243aa MW: 25648.7 Da PI: 8.9244 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 73.1 | 3.1e-23 | 96 | 140 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRC ++v++++k+CErH+hrgr+ srk++e+ NNU_001408-RA 96 EPEPGRCRRTDGKKWRCTKDVVPDQKYCERHMHRGRKCSRKHVEA 140 69*****************************************97 PP | |||||||
2 | QLQ | 58.3 | 2.3e-20 | 26 | 61 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Qlq+L++Q+l++Ky++a++PvP +L+++i+k NNU_001408-RA 26 GFTFLQLQELEHQALIFKYMVAGVPVPVHLVLPIWK 61 69********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.6E-9 | 25 | 61 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.775 | 26 | 61 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.6E-14 | 27 | 60 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.087 | 96 | 140 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.2E-19 | 97 | 139 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGAGSPSVGL GLGLGLGPGL SHGKSGFTFL QLQELEHQAL IFKYMVAGVP VPVHLVLPIW 60 KSVVSSYGGV NGGIYQHYPS FLGCTSLCLD YRNSMEPEPG RCRRTDGKKW RCTKDVVPDQ 120 KYCERHMHRG RKCSRKHVEA SQGGATPPCA AAAASSVNAT TSKTNNDSLN SNTNLSISIP 180 ANLELTTTTT TTNTNTNNNN DVSGSNTSNN ISNSNAGINV SPSLGFSPKS VLQSGTCKTD 240 SSL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010276023.1 | 1e-180 | PREDICTED: growth-regulating factor 10 | ||||
Swissprot | Q6AWX7 | 3e-53 | GRF12_ORYSJ; Growth-regulating factor 12 | ||||
TrEMBL | A0A1U8BHC9 | 1e-179 | A0A1U8BHC9_NELNU; growth-regulating factor 10 | ||||
STRING | XP_010276023.1 | 1e-179 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 3e-32 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
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