PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_001380-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

WRKY

Protein Properties

Length: 321aa MW: 35445.5 Da PI: 8.8196

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_001380-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.7	1.1e-33	184	241	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCts++C+vkk+vers +dp++v++tYeg+H+h+ NNU_001380-RA 184 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCSVKKRVERSFQDPSIVITTYEGQHTHQ 241 8********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-35	168	243	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-29	175	243	IPR003657	WRKY domain
PROSITE profile	PS50811	31.674	178	243	IPR003657	WRKY domain
SMART	SM00774	7.4E-40	183	242	IPR003657	WRKY domain
Pfam	PF03106	1.8E-26	184	241	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MSGEARNLFH HDLPFHDDRR NVGKSGFIPF STDPPSMFNQ SVHGLGDSAA RDLNGFDPSY 60 LSFTDCLHGA LDYSTLSRAF DLSCSPPDAF HPVDDATQKT GGMGESTGTT DIPATPNSSV 120 SSSSTEAAGE EDSGKSKKDR QPKGSEDAVD KPNKKVSKPK KKGEKRQREP RFAFMTKSEV 180 DHLEDGYRWR KYGQKAVKNS PYPRSYYRCT SQKCSVKKRV ERSFQDPSIV ITTYEGQHTH 240 QSPSTLRGNA AAMMAPSMLT PPPPAGPIFP QELLLQLPST NNQAAATRSS LYQQTLAQQL 300 RLPDYGLLQD MVPSFIHRQL S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-27	173	244	7	78	Probable WRKY transcription factor 4
2lex_A	2e-27	173	244	7	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010275648.1	0.0	PREDICTED: probable WRKY transcription factor 71
Swissprot	Q8VWJ2	1e-62	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A1U8B459	0.0	A0A1U8B459_NELNU; probable WRKY transcription factor 71
STRING	XP_010275648.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	2e-59	WRKY DNA-binding protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]