PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_000967-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 597aa    MW: 68569.8 Da    PI: 5.3402
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_000967-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00074568586220
                    EETTTTEEESSHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                    +C+ Cg+ F ++  L++H+
  NNU_000967-RA 568 SCETCGENFETRNKLHKHL 586
                    6*****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.83E-214109IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1106.2E-22485IPR001623DnaJ domain
SMARTSM002712.9E-18668IPR001623DnaJ domain
CDDcd062574.17E-15765IPR001623DnaJ domain
PROSITE profilePS5007618.41776IPR001623DnaJ domain
PfamPF002264.1E-19873IPR001623DnaJ domain
PRINTSPR006256.1E-13927IPR001623DnaJ domain
PRINTSPR006256.1E-132742IPR001623DnaJ domain
PRINTSPR006256.1E-134868IPR001623DnaJ domain
PROSITE patternPS0063605372IPR018253DnaJ domain, conserved site
SuperFamilySSF576673.97E-13289341No hitNo description
SMARTSM004511.0E-5298332IPR003604Zinc finger, U1-type
SMARTSM003555.6301325IPR015880Zinc finger, C2H2-like
PfamPF121718.1E-10301326IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280303325IPR007087Zinc finger, C2H2
SMARTSM003559.3567591IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.473567596IPR007087Zinc finger, C2H2
PROSITE patternPS000280569591IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MAPEKRCLYE ILALSRDRSP EEIRSAYKKL ALQRHPDKLI QTGVPEEEAT AAFQELVNAY  60
EVLSDPRERA WYDSHRSQIL FSDATNVSKS SSGFSTIPNI FSFFSNSVYS GYGDTGKGFF  120
KVYGDVFDKI YAQEVMFAKK LGLGSGTVRD APLMGNLESP YAQVSAFYNY WLGFCTVMDF  180
CWVDEYDAMA GPNRKSRRLM EEENKKLRKR AKKEYNEMVR GLAEFVKKRD KRVIDMQMKR  240
NMEQEKRREE ERTRKKEAER AKLEKARLYE EPEWAKVDEE EMENDFDEPD DDKKQSDARE  300
LYCVVCSKKF KSDKQWKNHE QSKKHREKVA QLRDTFEMED DQEESGNEEG LGSENIVEEL  360
REEFEDALDF QEAQREAVSI SSDDEGIEVS FVNDSNGFDE SFGSDEEASI LEAMVSEHKN  420
RTNNASKRQP KSYARNDSEE TDFMEYDNRK ISRRNRAAKK EGSRKTNGEV QRTEIVETAE  480
EVESKYNGNN VPSEDHDRND SSTKDALSHA LGDTDANGRV DRPLDKGLKV LNQPIDKKGT  540
GKKDVKTKSK NSSKGKKEKV VSKASGNSCE TCGENFETRN KLHKHLGDTG HATLKSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204212KKLRKRAKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259849.10.0PREDICTED: DNAJ protein JJJ1 homolog
RefseqXP_010259857.10.0PREDICTED: DNAJ protein JJJ1 homolog
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A1U8A1180.0A0A1U8A118_NELNU; DNAJ protein JJJ1 homolog
STRINGXP_010259849.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-167DNAJ heat shock N-terminal domain-containing protein