PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_000778-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 619aa    MW: 69166.5 Da    PI: 6.6854
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_000778-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12457503455
                    HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                    +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  NNU_000778-RA 457 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITELQ 503
                    799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.6E-5452239IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.876453502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-14456507No hitNo description
SuperFamilySSF474592.75E-18456518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-10457503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-18457519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-16459508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MKTETGMGGG FWNDEDKAAV VAVLGARAFE YLMKSTVSSE GLMTAVGNDE NLQNKLSDLV  60
EGPNASNFTW NYAIFWQISS SKTGELVLGW GDGYCREPKE GEESEATHNL SFRFEDETQQ  120
KMRKRVLQKL HTFFGGSDEE SYAFGLDRVT DTEMFFLASM YFFFPQGEGA PGKAFGSGKY  180
LWISDALKSP DYCVRSFLAR SAGLQTVVLV PTDTGVAELG SVRSISENLE VLQTIRSMFS  240
KSAAFPIQVK PLPASNEKKD SSAIASDSRT VERADEFPKI FGQDLNPIRS NSQHSERLVV  300
AKVEERQWDV YNGNRLPFNN RKSVHGFGPS WFHGIKPGAI AEVISPQNPG NNQQKLGHTV  360
LMINNNIEPS HRSFGHCNGI REDTRLNPFQ AQMQAQRQID FTGTTSRSPV ITRQSAIESE  420
HSDVEASCKE DRPCTVDERR PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV  480
PNISKMDKAS LLGDAITYIT ELQKKLKDME SEREKFGNQS RDTVASEANS VGDDRKRGPD  540
IDIQALHDEV IVRVNCPLDV HPVSRVIHAF KEAQITVVES KISAGNDTVF HTFVVKSQGS  600
EQLTKEKLIA AFSHESSTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-29451519270Transcription factor MYC2
5gnj_B1e-29451519270Transcription factor MYC2
5gnj_E1e-29451519270Transcription factor MYC2
5gnj_F1e-29451519270Transcription factor MYC2
5gnj_G1e-29451519270Transcription factor MYC2
5gnj_I1e-29451519270Transcription factor MYC2
5gnj_M1e-29451519270Transcription factor MYC2
5gnj_N1e-29451519270Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1438446RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010256776.10.0PREDICTED: transcription factor bHLH13
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A1U7ZT940.0A0A1U7ZT94_NELNU; transcription factor bHLH13
STRINGXP_010256776.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]